Input parameters:

  Query = ENSMUSP00000092810 (Len=611)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000092810, Len=611):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIAKDKDTLDFIRGLCKHRYICIQSSLAKVSSKKVNEKEVDKFQLYQNFSCNIRTIHHHQILAINRGENLKILTVKVNIS 80  
WD40-rpts                                                                                      

Query       81 DGVKNEFCRWCIQNRWRPRGFARPELMKILHNSLDDSFKRLIVPLLCREFRAKLTSDAEKQSVMMFGQNLRQLLLTSPVP 160 
WD40-rpts                                                                                      

Query      161 GRTLMGVDPGYKHGCKLAIISPTSQILHTDVVYLHCGQGFREAEKIKRLLLHFNCRTVVIGNGTACRETEAYFADLIMKN 240 
WD40-rpts                                                          (___________________________

Query      241 YFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKFDPKHIGVGMYQHDVSQTLLKATL 320 
WD40-rpts      ______________WD 1________________________________________)                     

Query      321 DSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQLKKVKGLGPKSFQQCAGFVRINQDYIRT 400 
WD40-rpts                                                                                      

Query      401 FCSQHTDSSGQSQETAMVTNEKLGKKKNKADATLIPNPLDQTCIHPESYDIAVRFLSFIGGTMCEIGKPEMQQKINVSLG 480 
WD40-rpts                                                                                      

Query      481 KEGIEETAERLQTTVHTLQVIIDGLSQPKTFDIRTDFDKPDFKRSIVCLEDLQVGTVLTGKVENATLFGVFVDIGVGKAG 560 
WD40-rpts                                                                                      

Query      561 LIPIRFITEAKLSKTKRRRSLGLGPGEKVEVKVLNVDIPRSRISLDLLRVL 611 
WD40-rpts                                                         

1 WD40-repeats found in QUERY=ENSMUSP00000092810 (Len=611):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   213-299      3.28  249.96  0.02633       20.0%     24.44

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  213-299    FNCRTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKFDP

   WD40 Template    TGECLRTLSGHTSG--------------------VTSVSFSPDGKRLVSGS---------EDGT------------------IKVWD