Input parameters:

  Query = ENSMUSP00000091846 (Len=1080)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000091846, Len=1080):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAKDEKRFNLALQINNFKASLVEFNKLVEQTTAQKKEERAGIFIPKEDSIDYDKFYTSVQQIFGPEVKNQDVKCFYRKL 80  
WD40-rpts                                                                                      

Query       81 CNNPDAAFDWCEIFGYFSTDEDSLTSQMDEENLVFLVSRKQRIVIAGSRRRDVIKCIVKVPQLDLLITASQKGLITVFNS 160 
WD40-rpts       (_______________WD 1______________)(___________________WD 2__________________)(

Query      161 QDTSWITGCDYLGQLKRIVATTERTIIVWDYKAQGSSQEHYFVIKPMDHCLLCVCVVPLPDQLCRDDILLGDDGGFVNKF 240 
WD40-rpts      _____________WD 3____________)                                 (________________

Query      241 TVSSDDFGLKQAKTKKKLQTQVLDSKNFKSVKRKLHNDWVMKIRYIPALNCFGSCSLDSVHSLVLESLKRLEDNLPVREF 320 
WD40-rpts      _WD 4________________) (__________________WD 5__________________)(______________

Query      321 AMPRGANSFCYCGKANVIVTGGDDKVLRLWHPNISTKPVGKLVGHMFSITEIVSNEKEQHVISLSSAKVFRVWDIQTLSV 400 
WD40-rpts      ______WD 6____________________)    (_________________WD 7________________)   (__

Query      401 LQVFHDSQGGPGDMQIYSMVYDANHGMLITGSGVIDMYPLTRMIQDTKQVPHTHEREVNVTLYNKYFHQVLTVCSESVIK 480 
WD40-rpts      _________________WD 8___________________)   (_________________WD 9______________

Query      481 VWELETGLQIYQILDPHGLSIELTCAAIDESGYLFATGAYNGTVKIWDFGSGQEMKMMPEGKDWVEEEHGLMRLFFLKPQ 560 
WD40-rpts      __)(____________________WD10___________________)         (___________________WD1

Query      561 VKQQHLILALERNGTIKIIQGKEDDIFLTVIWELPDAMPYLQYGSHIVHLKMSTKERTMAIPFPDVELIVQKTSQQTNYS 640 
WD40-rpts      1__________________)            (_________________WD12_________________)   (____

Query      641 PIVDVDVNCIDVFQTEGYNLIACGTTNGMIILWNFIAASVKEIYRPEDCFSTDPELDPKRFRINDIMFLFRSPECVRRSS 720 
WD40-rpts      _____________WD13________________)                                      (_______

Query      721 QDSICSSTQCDSSKGPQSSKGSKQSIHDADVKGEHTDMVGEQQSASRKQPVPISFVEPQPPLLVSAHEDGHLRLWTLEGK 800 
WD40-rpts      _________WD14________________)      (_________________WD15_________________)    

Query      801 LIKDMLPFTKHSAISLTSLYTDSCCRVLLAGNVEGHVILCSISSFMDPPHDEKKFKQLLSWRAHSLEIIQVIYVEEKQLV 880 
WD40-rpts        (_________________WD16________________)             (_________________WD17____

Query      881 LTASIDGSVRIWNSTSGHYCGYFGQRRMFDLSQTSDFILPCDVNEYPIEIKEESKFTEKTQKYEYPLIFDRERWKKMSSM 960 
WD40-rpts      ____________)                                                                   

Query      961 SLLFKRPPLSPFEVQHDFKFFKSLSSPKIRRYALEGFLTENREAGIVFGSLPIYRVPSPTSLRFLPLIGSEVQRDSVEGV 1040
WD40-rpts                                                                                      

Query     1041 YMKKKHDKVPFIPQSRRKSLKRNLVPQINLASSFFPTTPK 1080
WD40-rpts                                              

17 WD40-repeats found in QUERY=ENSMUSP00000091846 (Len=1080):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    82-116      5.17  328.28  0.00234        5.0%     26.54
  WD 2:  Seg  3   117-159      6.81  395.89  0.00029       17.5%     52.37
  WD 3:  Seg  7   160-190      4.15  286.00  0.00868       30.0%     40.30
  WD 4:  Seg 12   224-262      5.65  348.23  0.00126       12.5%     50.60
  WD 5:  Seg 16   264-305      6.98  403.12  0.00023       15.0%     50.79
  WD 6:  Seg 20   306-351      6.80  395.60  0.00029       15.0%     52.22
  WD 7:  Seg 24   356-394      8.25  455.56  4.5e-05       22.5%     57.20
  WD 8:  Seg 28   398-441      5.99  362.01  0.00082       15.0%     59.10
  WD 9:  Seg 32   445-483      7.88  440.17  7.3e-05       15.0%     54.60
  WD10:  Seg 36   484-528      7.58  427.80  0.00011       22.5%     47.26
  WD11:  Seg 41   538-580      4.15  285.96  0.00869       15.0%     35.29
  WD12:  Seg 46   593-632      7.93  442.06  6.9e-05       10.0%     42.22
  WD13:  Seg 49   636-674      7.47  423.06  0.00012       12.5%     51.61
  WD14:  Seg 55   713-750      6.11  366.87  0.00071       25.0%     49.39
  WD15:  Seg 59   757-796      6.60  387.35  0.00037       27.5%     49.39
  WD16:  Seg 63   803-841      5.96  361.03  0.00085       15.0%     40.17
  WD17:  Seg 67   855-893      7.78  436.18  8.2e-05       17.5%     57.40

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   82-116    ----------------N--NPDAAFDW-----CEIFGY-FSTDEDSLTSQMDEENLVFL
   WD 2  117-159    VS---RKQR-----IVI--AGSRRRDV-----IKCIVK-VPQLDLLITASQKGLITVFN
   WD 3  160-190    ---------------------SQDTSW-----ITGCDY-LGQLKRIVATT-ERTIIVWD
   WD 4  224-262    -C------R-----DDI--LLGDDGGF-----VNKFTV-SSDDFGLKQAKTKKKLQTQV
   WD 5  264-305    DS------K-----NFKSVKRKLHNDW-----VMKIRY-IPALNCFGSCSLDSVHSLVL
   WD 6  306-351    ESLKRLEDN-----LPV--REFAMPRG-----ANSFCY-CGKANVIVTGGDDKVLRLWH
   WD 7  356-394    -T------K-----PVG--KLVGHMFS-----ITEIVS-NEKEQHVISLSSAKVFRVWD
   WD 8  398-441    -L------S-----VLQ--VFHDSQGGPGDMQIYSMVY-DANHGMLITGSGVIDMYPLT
   WD 9  445-483    -Q------D-----TKQ--VPHTHERE-----VNVTLY-NKYFHQVLTVCSESVIKVWE
   WD10  484-528    LE------TGLQIYQIL--DPHGLSIE-----LTCAAI-DESGYLFATGAYNGTVKIWD
   WD11  538-580    MP------E--GKDWVE--EEHGLMRL-----FFLKPQ-VKQQHLILALERNGTIKIIQ
   WD12  593-632    EL------P-----DAM--PYLQYGSH-----IVHLKM-STKERTMAIPFPDVELIVQK
   WD13  636-674    -Q------T-----NYS--PIVDVDVN-----CIDVFQ-TEGYNLIACGTTNGMIILWN
   WD14  713-750    -P------E-----CVR--RSSQDSIC-----SSTQCD-SSKGPQSSKGS-KQSIHDAD
   WD15  757-796    -D------M-----VGE--QQSASRKQ-----PVPISFVEPQPPLLVSAHEDGHLRLWT
   WD16  803-841    -K------D-----MLP--FTKHSAIS-----LTSLYT-DSCCRVLLAGNVEGHVILCS
   WD17  855-893    -F------K-----QLL--SWRAHSLE-----IIQVIY-VEEKQLVLTASIDGSVRIWN

   WD40 Template    TG------E-----CLR--TLSGHTSG-----VTSVSF-SPDGKRLVSGSEDGTIKVWD