Input parameters:

  Query = ENSMUSP00000091229 (Len=1273)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000091229, Len=1273):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASSST 80  
WD40-rpts        (_________________WD 1________________)       (_________________WD 2__________

Query       81 DNLVIIWNVAEQKVIAKLDNIKETPACLGWCWNTHDAVAFVSQKGPLLIWTISGPDSGVSVHKEAHSFASDICIFRWHTQ 160 
WD40-rpts      _______)   (_________________WD 3_________________)                             

Query      161 KKGKVAFGHIDGSISIFQPDEEDPVTALEWDPLSTDYLLVANLHFGIRLLDSESLYCITTFNLPSAAVSVQCLAWVPSAP 240 
WD40-rpts                 (_________________WD 4_________________)   (___________________WD 5__

Query      241 GMFITGDSQVGVLRIWNVSRTTPIDNFKLKKTGFHCFHVVNSPPKKKFSVQSPNKNHYISSTSEAVPPPNLTQNQAFSLP 320 
WD40-rpts      ________________)(___________________WD 6___________________)_______________WD 7

Query      321 PGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNVLATASFDGTIKVWDINTLTAVYTSPGNEGVIFA 400 
WD40-rpts      ________________)(___________________WD 8___________________)   (_______________

Query      401 LSWAPGDLNCIAGATSRNGAFIWDIQKGKIIQRFNEHGKNGIFYIAWSHKDSKRIATCSGDGFCIIRTVDGKLLHKYKHP 480 
WD40-rpts      __WD 9_________________)   (__________________WD10_________________)(___________

Query      481 AAVFGCDWSQNNKDMIATGCEDKNIRVFYVATSSNQPLKVFSGHTARVFHVKWSPLREGILCSGSDDGSVRIWDYTQDAC 560 
WD40-rpts      _______WD11_________________)     (_________________WD12_________________)   (__

Query      561 VSTLNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRGGVCLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWS 640 
WD40-rpts      _______________WD13_________________)   (_________________WD14_________________)

Query      641 LIPLITPLQINILADRSWDEVIGNTDNAIRQDCPPLLCGKVSRDIKQEVEKLTCNPRAKKLRLFSECLSPPGGSDNLWNL 720 
WD40-rpts                (_________________WD15________________)                               

Query      721 VSVIKGQDDSLLPQNYCKGMMHLKHLIKFRTSEAQELTTIKMSKFGGGVGAPTKEKKLKEAAEIHLRLGQIQRYCELMVE 800 
WD40-rpts                                                                                      

Query      801 LGEWDKALSVAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVKKLVNFFVSRGQLKEALLVAQAACEGNMQNAH 880 
WD40-rpts                                                                                      

Query      881 VSTPKGASNSDDIHKEDFNELLHKVINELAEWYFQDGQAVLAACCHLAVDDIELAMAYLIRGNELELAVSVGTVLGEPAA 960 
WD40-rpts                                                                                      

Query      961 PAMHYALQLLATKCMMIPMCFPSVVYRNLAADLLLMTPGSEVHLVKLCAFYPGCIEEINDLHKKCNLPPAEECTQLAETA 1040
WD40-rpts                                                                                      

Query     1041 RADGNVFETIKYYLLSQEPEKALPIGIDFVKGCISNSNWTLDTVYPVLDLMSYIRTEKLLLHTCTEARNELLILCGYIGA 1120
WD40-rpts                                                                                      

Query     1121 LLAIRRQYQSIVPSLYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSTKQSSEDSPYTPPSDSQRTVYETLLKRLKE 1200
WD40-rpts                                                                                      

Query     1201 EPLKGITGLDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSTISLNDALMWAKVNPFSPLGTGIRLNPF 1273
WD40-rpts                                                                               

15 WD40-repeats found in QUERY=ENSMUSP00000091229 (Len=1273):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       3.00  238.59  0.03727       10.0%     50.97
  WD 2:  Seg  5    49-88       5.88  357.36  0.00095       22.5%     52.79
  WD 3:  Seg  9    92-131      4.74  310.65  0.00405       10.0%     56.50
  WD 4:  Seg 15   172-211      5.10  325.50  0.00255       17.5%     57.05
  WD 5:  Seg 19   215-257      4.49  299.99  0.00563       20.0%     52.92
  WD 6:  Seg 23   258-301      5.15  327.33  0.00241       15.0%     51.74
  WD 7:  Seg 26   299-337      5.52  342.83  0.00149       15.0%     37.38
  WD 8:  Seg 30   338-381      7.13  409.38  0.00019       40.0%     53.98
  WD 9:  Seg 34   385-424      5.86  356.78  0.00097       17.5%     57.26
  WD10:  Seg 38   428-468      5.21  330.00  0.00222       25.0%     54.25
  WD11:  Seg 42   469-509      6.35  376.92  0.00052       25.0%     55.31
  WD12:  Seg 46   515-554      8.22  454.36  4.7e-05       42.5%     52.37
  WD13:  Seg 50   558-597      8.18  452.68  4.9e-05       45.0%     54.74
  WD14:  Seg 54   601-640      7.18  411.37  0.00018       30.0%     55.05
  WD15:  Seg 59   651-689      3.29  250.58  0.02584       20.0%     30.31

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-41     QVR---QVG----LLAAG-CQ--PWNKDVCA-A-N--G-D-RFAYCA-TLAIYIYQ
   WD 2   49-88     -FK---LHA----IMSEH-KK--TITAISWC-PHN--P-D-LFASSSTDNLVIIWN
   WD 3   92-131    -QK---VIA----KLDNI-KE--TPACLGWC-W-N--T-HDAVAFVSQKGPLLIWT
   WD 4  172-211    -GS---ISI----FQPDE-ED--PVTALEWD-PLS--T-D-YLLVANLHFGIRLLD
   WD 5  215-257    -LY---CIT----TFNLP-SAAVSVQCLAWV-P-SAPG-M-FITGDSQVGVLRIWN
   WD 6  258-301    VSR---TTPIDNFKLKKT-GF--HCFHVVNS-P-P--K-K-KFSVQSPNKNHYISS
   WD 7  299-337    -IS---STS----EAVPP-PN--LTQNQAFS-L-P--P-G-HVVCCFLDGGVGLYD
   WD 8  338-381    MGAKKWDFL----RELGH-VE--TIFDCKFK-P-D--DPN-VLATASFDGTIKVWD
   WD 9  385-424    -LT---AVY----TSPGN-EG--VIFALSWA-PGD--L-N-CIAGATSRNGAFIWD
   WD10  428-468    -GK---IIQ----RFNEHGKN--GIFYIAWSHK-D--S-K-RIATCSGDGFCIIRT
   WD11  469-509    VDG---KLL----HKYKH-PA--AVFGCDWS-Q-N--N-KDMIATGCEDKNIRVFY
   WD12  515-554    -NQ---PLK----VFSGH-TA--RVFHVKWS-P-L--R-EGILCSGSDDGSVRIWD
   WD13  558-597    -DA---CVS----TLNGH-TA--PVRGLMWN-T-E-IP-Y-LLISGSWDYTIKVWD
   WD14  601-640    -GV---CLD----TVYDH-GA--DVYGLTCH-P-S--R-PFTMASCSRDSTVRLWS
   WD15  651-689    NIL---ADR----SWD-E-VI--GNTDNAIR-Q-D--C-P-PLLCGKVSRDIKQEV

   WD40 Template    TGE---CLR----TLSGH-TS--GVTSVSFS-P-D--G-K-RLVSGSEDGTIKVWD