Input parameters:

  Query = ENSMUSP00000091048 (Len=315)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000091048, Len=315):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFPEPKPRAPELPQKRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNS 80  
WD40-rpts                   (_________________WD 1_________________)   (_________________WD 2__

Query       81 HLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVK 160 
WD40-rpts      ______________)   (_________________WD 3________________)     (________________W

Query      161 VSDHEILAGSVDGRVRRYDLRMGQVSSDYVGSPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLD 240 
WD40-rpts      D 4_______________)(_________________WD 5_________________)   (_________________

Query      241 CCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSNVVQSLAYHPTEPCLLTAMGGSIQYWREETYEAEGGAG 315 
WD40-rpts      _WD 6_________________)   (________________WD 7________________)           

7 WD40-repeats found in QUERY=ENSMUSP00000091048 (Len=315):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-53       8.89  481.73  2.0e-05       27.5%     52.21
  WD 2:  Seg  5    57-95      10.19  535.40  3.8e-06       42.5%     57.55
  WD 3:  Seg  9    99-137     10.34  541.69  3.1e-06       32.5%     55.11
  WD 4:  Seg 13   143-179      7.41  420.65  0.00013       30.0%     49.79
  WD 5:  Seg 17   180-219      7.96  443.32  6.6e-05       25.0%     54.21
  WD 6:  Seg 21   223-263      8.31  457.90  4.2e-05       35.0%     54.51
  WD 7:  Seg 25   267-304      7.59  428.18  0.00011       22.5%     51.77

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-53     PQKRMKTLDCSQGAVRAVR--FNVDGNYCLTCGSDKTLKLWN
   WD 2   57-95     -GTLLRTYSGHGYEVLDAA--GSFDNSHLCSGGGDKTVVLWD
   WD 3   99-137    -GQVVRKFRGHAGKVNTVQ--FNEEATVILSGSIDSSVRCWD
   WD 4  143-179    -PEPVQTLDEARDGISSVK--VSDH--EILAGSVDGRVRRYD
   WD 5  180-219    LRMGQVSSDYVGSPITCTC--FSRDGQCTLISSLDSTLRLLD
   WD 6  223-263    -GELLGEYVGHKNQQYKLDCCLSERDTHVVSCSEDGKVFFWD
   WD 7  267-304    -GALALALPVGSNVVQSLA--YHPTEPCLLTAM-GGSIQYWR

   WD40 Template    TGECLRTLSGHTSGVTSVS--FSPDGKRLVSGSEDGTIKVWD