Input parameters:

  Query = ENSMUSP00000090893 (Len=542)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000090893, Len=542):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPDSVIEDKTIELMCSVPRSLWLGCANLVESMCALSCLQSMPSVRCLQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYF 80  
WD40-rpts                                                                                      

Query       81 DQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISE 160 
WD40-rpts                                                                                      

Query      161 GMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENS 240 
WD40-rpts                                                                   (__________________

Query      241 KGVYCLQYDDDKIISGLRDNSIKIWDKSSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHN 320 
WD40-rpts      __WD 1___________________)   (________________WD 2_______________)   (__________

Query      321 EAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLN 400 
WD40-rpts      ______WD 3_______________)(___________________WD 4__________________)   (_______

Query      401 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPA 480 
WD40-rpts      _________WD 5_______________)   (________________WD 6_______________)           

Query      481 STLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR 542 
WD40-rpts       (________________WD 7_______________)                        

7 WD40-repeats found in QUERY=ENSMUSP00000090893 (Len=542):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   222-266      6.51  383.78  0.00042       30.0%     48.83
  WD 2:  Seg  5   270-306      8.87  481.08  2.0e-05       42.5%     49.36
  WD 3:  Seg  9   310-346      7.98  444.27  6.4e-05       40.0%     51.42
  WD 4:  Seg 13   347-389      7.70  432.69  9.2e-05       45.0%     44.70
  WD 5:  Seg 16   393-429      8.59  469.41  2.9e-05       40.0%     51.65
  WD 6:  Seg 20   433-469      8.96  484.97  1.8e-05       55.0%     52.88
  WD 7:  Seg 23   482-518      6.86  397.87  0.00027       40.0%     47.46

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  222-266    NWR-----CGRHNLQRIQCRSENSKGVYCLQY--DDDKIISGLRDNSIKIWD
   WD 2  270-306    -LE-----C-------LKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWD
   WD 3  310-346    -GE-----V-------LNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWD
   WD 4  347-389    MASATDITL-------RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWS
   WD 5  393-429    -CE-----F-------VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD
   WD 6  433-469    -GA-----C-------LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD
   WD 7  482-518    -TL-----C-------LRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD

   WD40 Template    TGE-----C-------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD