Input parameters:

  Query = ENSMUSP00000090726 (Len=589)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000090726, Len=589):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKRVRTEQVQVAVSCYLKRRQYVDSEGPLKQGLRLSQTPEEMAANLTVQSESGCANAVSAAPCQAEPQQYEVQFGRLRSF 80  
WD40-rpts                                                                                      

Query       81 LTDSDSQYSREVMPLLYPLFVYLHLNLVQSGPKSTVESFYSRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFQLRAFLD 160 
WD40-rpts                                                                                      

Query      161 NKYVVRLQEDSYNYLIRYLQSDNNTALCKVLAVHIHLDVQPAKRTDYQLYASGGSSRTENSSLEPPEVPSPILQNEAALE 240 
WD40-rpts                              (_________________WD 1________________)                 

Query      241 VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWSLRSKKLKSEPHHVDTSRIRLACDT 320 
WD40-rpts                (____________________WD 2____________________)                        

Query      321 LEEEENEEDNTGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFA 400 
WD40-rpts                 (_________________WD 3________________)   (_________________WD 4_____

Query      401 SGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNG 480 
WD40-rpts      ___________)   (_________________WD 5________________)   (_________________WD 6_

Query      481 KYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGELVGVYT 560 
WD40-rpts      _______________)   (_________________WD 7________________)              (_______

Query      561 GQMSNVLSVQFMACNLLLVTGITQENQEH 589 
WD40-rpts      _________WD 8_______________)

8 WD40-repeats found in QUERY=ENSMUSP00000090726 (Len=589):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   185-223      4.55  302.41  0.00522       15.0%     16.23
  WD 2:  Seg  8   251-296      7.90  441.03  7.1e-05       25.0%     55.07
  WD 3:  Seg 14   332-370      9.39  502.40  1.1e-05       40.0%     53.93
  WD 4:  Seg 18   374-412      8.82  479.02  2.2e-05       30.0%     52.12
  WD 5:  Seg 22   416-454      9.67  514.06  7.3e-06       35.0%     48.61
  WD 6:  Seg 26   458-496     10.63  553.85  2.1e-06       47.5%     54.50
  WD 7:  Seg 30   500-538     10.57  551.10  2.3e-06       42.5%     53.31
  WD 8:  Seg 33   553-589      4.45  298.29  0.00593       27.5%     39.35

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  185-223    -TA------LCKVLAVHIHLDVQPAKRTDYQLYASGGSSRTENSSL
   WD 2  251-296    DGPPSLTTICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWS
   WD 3  332-370    -GT------EMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWD
   WD 4  374-412    -FT------NTVLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWS
   WD 5  416-454    -TY------PLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWS
   WD 6  458-496    -GN------SVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWD
   WD 7  500-538    -GT------LFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWD
   WD 8  553-589    -GE------LVGVYTGQMSNVLSVQFMACNLLLVTGITQENQE--H

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD