Input parameters:

  Query = ENSMUSP00000090496 (Len=943)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000090496, Len=943):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNETMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGSPLTEEKEKIVWVRFENADLNDTSRNLEFH 80  
WD40-rpts                                                                                      

Query       81 ELHSTGNEPPLLVMIGYSDGMQVWGIPISGEAQELFSVRHGPVRAARILPAPQLGAQKCDNFAEKRPLLGVCKSIGSSGT 160 
WD40-rpts                                                                                      

Query      161 TPPYCCVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWL 240 
WD40-rpts                                                                                      

Query      241 AYAENKLIRCHQSRGGACGDNIQSYTATVLSAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVALHCNSRRSPLVPGIIT 320 
WD40-rpts                                                                                      

Query      321 VIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLH 400 
WD40-rpts                      (___________________WD 1___________________)                    

Query      401 RGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMSPRVVNRMSRFQKSAGLEEIEQELTSKQGGRCS 480 
WD40-rpts                                                                                      

Query      481 PVPGLSSSPSGSPLHGKLTSQDSYNNFTNNNPGNPRLSPLPSLMVVTPLAQIKQPMTLGTITKRTGPYLFGAGCFSIKAP 560 
WD40-rpts                                                                                      

Query      561 CKVKSPPQISPSKSMGGEFCVAAVFGTSRSWFANNAGLKREKDQSKQVVVESLYIISCYGTLVEHMIEPRPISTAPKISD 640 
WD40-rpts                                                                                      

Query      641 DTPLEIMTSPRASWTLVRTPQWNELQPPFNANHPLLLAAEAVQYYQLLLAGSLPPGSPGPITRHGSYDSLASDHSGQEDE 720 
WD40-rpts                                                                                      

Query      721 EWLSQVEIVTHTGPHRRLWMGPQFHFKTIQTSGQTTVISTSSSVLQSHGPSDTPQPLLDFDTDDLDLNSLRIQPVRSDPV 800 
WD40-rpts                                                                                      

Query      801 SMPGSSRAVSDRRGVSTVTDAASGTFDRSVTLLEVCGSWPEGFGLRHMSSMEHSEEGLRERLADAMAESPSRDVVGSGTD 880 
WD40-rpts                                                                                      

Query      881 TALDVAVKNSTPERPMAVKCLGKKKGKKKQCQQPSVREQPNSNKACVRDGGRTSARGKHRDSE 943 
WD40-rpts                                                                     

1 WD40-repeats found in QUERY=ENSMUSP00000090496 (Len=943):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   337-380      3.56  261.79  0.01831       20.0%     50.73

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  337-380    DSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQ

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD