Input parameters:

  Query = ENSMUSP00000090126 (Len=623)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000090126, Len=623):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIVYVYLKKRSEFGKQCNFSDRQAELNIDILPNPELAALYVERNPVDTGIQCSASMSEHEANTERFEMESCGVNHVEGG 80  
WD40-rpts                                                                                      

Query       81 WPKDVNPQELEQTIRFRKKVEKDENYINAVMQLGSIMEHCIKQNNAIDIYEEYFDDEEAVEVTEEAPSAKTINVFRDPQE 160 
WD40-rpts                                                                                      

Query      161 IKRTATHLSWHPDGNRKLAVAYSCLKFQRAPMSMNYDSYIWDLENPNRPEIALKPLSPLVTLEYNPKDSHVLLGGCYNGQ 240 
WD40-rpts                                                (___________________WD 1______________

Query      241 IACWDTRKGSLVAELSTIEFSHRDPVYGTIWLQSKTGTECFSASTDGQVMWWDIRKISEPIEVVIMDISRKEQLENALGA 320 
WD40-rpts      ____)       (__________________WD 2_________________)             (_____________

Query      321 ISLEFESTLPTKFMVGTEQGIVISCNRKAKTQAEKIVCTFYGHHGPIYALQRNPFYPKNFLTVGDWTARIWSEDSRESSI 400 
WD40-rpts      ____WD 3_________________)           (_______________WD 4______________)(_______

Query      401 MWTKYHMAYLSDGAWSPVRPAVFFTTKMDGTLDIWDLVFKQCDPALSLKVCDDPLFCLRVQDNGCLIACGSELGTTTLLE 480 
WD40-rpts      ____________WD 5___________________)(___________________WD 6___________________)

Query      481 VSSSLSTLQRNEKNIASSIFERETRREKILEARHREMRLKEKGKVEGKEDDQKEEEAALDLDELVGKAEEEFFEVIFSEL 560 
WD40-rpts                                                                                      

Query      561 KRKEAEALKKKPKPRKKSSVKVEAEEEVEENVGEEEEAGGIIGIDAVEDMSEEAGEEQEDVPT 623 
WD40-rpts                                                                     

6 WD40-repeats found in QUERY=ENSMUSP00000090126 (Len=623):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   203-245      4.18  287.42  0.00831       25.0%     45.28
  WD 2:  Seg 13   253-293      4.83  314.37  0.00361       27.5%     49.40
  WD 3:  Seg 18   307-346      2.83  231.53  0.04619       12.5%     43.17
  WD 4:  Seg 21   358-392      4.81  313.50  0.00370       17.5%     41.13
  WD 5:  Seg 24   393-436      4.17  286.82  0.00846       20.0%     52.07
  WD 6:  Seg 28   437-480      4.01  280.13  0.01040       17.5%     55.15

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  203-245    LE----NPNRPEIALKPLSPLVTLEY--NPKDSHVL-LGGCYNGQIACWD
   WD 2  253-293    -A----ELST--IEFSHRDPVYGTIWLQSK-TGTEC-FSASTDGQVMWWD
   WD 3  307-346    DI----SRKE--QLENALGAISLEFE--ST-LPTKF-MVGTEQGIVISCN
   WD 4  358-392    ---------C--TFYGHHGPIYALQR--NP-FYPKN-FLTVGDWTARIWS
   WD 5  393-436    ED-SRESSIM--WTKYHMAYLSDGAW--SP-VRPAVFFTTKMDGTLDIWD
   WD 6  437-480    LVFKQCDPAL--SLKVCDDPLFCLRV--QD-NGCLI-ACGSELGTTTLLE

   WD40 Template    TG----ECLR--TLSGHTSGVTSVSF--SP-DGKRL-VSGSEDGTIKVWD