Input parameters:

  Query = ENSMUSP00000089394 (Len=1135)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000089394, Len=1135):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADQIPLYPVRSAGAAASHRRAAYYSSAGPGPGADRRGRYQLEDESAHLDEMPLMMSEEGFENDESDYHTLPRARITRRK 80  
WD40-rpts                                                                                      

Query       81 RGLEWFVCGGWKFLCTSCCDWLINVCQRKKELKARTVWLGCPEKCEEKHPRNSIKNQKYNVFTFIPGVLYEQFKFFLNLY 160 
WD40-rpts                                                                                      

Query      161 FLVVSCSQFVPALKIGYLYTYWAPLGFVLAVTIAREAIDEFRRFQRDKEMNSQLYSKLTVRGKVQVKSSDIQVGDLIIVE 240 
WD40-rpts                                                                                      

Query      241 KNQRIPSDMVFLRTSEKAGSCFIRTDQLDGETDWKLKVAVSCTQRLPALGDLFSISAYVYAQKPQLDIHSFEGTFTREDS 320 
WD40-rpts                                                                                      

Query      321 DPPIHESLSIENTLWASTIVASGTVIGVVIYTGKETRSVMNTSNPKNKVGLLDLELNQLTKALFLALVVLSVVMVTLQGF 400 
WD40-rpts                                                                                      

Query      401 AGPWYRNLFRFLLLFSYIIPISLRVNLDMGKAAYGWMIMKDENIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFK 480 
WD40-rpts                                                                                      

Query      481 RLHLGTVSYGTDTMDEIQSHVLNSYLQVHSQPSGHNPSSAPLRRSQSSTPKVKKSVSSRIHEAVKAIALCHNVTPVYEAR 560 
WD40-rpts                                                                                      

Query      561 AGITGETEFAEADQDFSDENRTYQASSPDEVALVRWTESVGLTLISRDLASMQLKTPSGQVLTYCILQMFPFTSESKRMG 640 
WD40-rpts                                                                                      

Query      641 IIVRDESTAEITFYMKGADVAMSTIVQYNDWLEEECGNMAREGLRTLVVAKRTLTEEQYQDFESRYSQAKLSIHDRALKV 720 
WD40-rpts                                                                                      

Query      721 AAVVESLEREMELLCLTGVEDQLQADVRPTLEMLRNAGIKIWMLTGDKLETATCIAKSSHLVSRTQDIHVFRPVTSRGEA 800 
WD40-rpts                                                                                      

Query      801 HLELNAFRRKHDCALVISGDSLEVCLRYYEHELVELACQCPAVVCCRCSPTQKAHIVTLLRQHTRKRTCAIGDGGNDVSM 880 
WD40-rpts               (_________________________________WD 1________________________________)

Query      881 IQAADCGIGIEGKEGKQASLAADFSITQFRHIGRLLMVHGRNSYKRSAALGQFVMHRGLIISTMQAVFSSVFYFASVPLY 960 
WD40-rpts                                                                                      

Query      961 QGFLMVGYATIYTMFPVFSLVLDQDVKPEMAILYPELYKDLTKGRSLSFKTFLIWVLISIYQGGILMYGALLLFEDEFVH 1040
WD40-rpts                                                                                      

Query     1041 VVAISFTALILTELLMVALTIRTWHWLMVVAEFLSLGCYVASLAFLNEYFDVAFITTVTFLWKVSAITVVSCLPLYVLKY 1120
WD40-rpts                                                                                      

Query     1121 LKRKLSPPSYSKLSS 1135
WD40-rpts                     

1 WD40-repeats found in QUERY=ENSMUSP00000089394 (Len=1135):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 29   810-880      3.33  252.23  0.02456       20.0%     34.27

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  810-880    KHDCALVISGDSLEVCLRYYEHELVELACQCPAVVCCRCSPTQKAHIVTLLRQHTRKRTCAIGDGGNDVSM

   WD40 Template    TGECLRTLS-------------------GHTSGVTSVSFSPD------------GKRLVSGSEDGTIKVWD