Input parameters:

  Query = ENSMUSP00000088541 (Len=325)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000088541, Len=325):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKQLEDHEAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAVKFDEQKLVTGSFDNTVA 80  
WD40-rpts              (________________WD 1_______________)   (_______________WD 2____________

Query       81 CWEWSSGARTQHFRGHTGAVFSVDYSDELDILVSGSADFAVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPG 160 
WD40-rpts      __)   (_________________WD 3________________)   (_____________________WD 4______

Query      161 DYILLSADKYEIKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRVIKTPEVANL 240 
WD40-rpts      _______________)      (_________________WD 5_________________)(_________________

Query      241 ALLGFGDVFALLFDNHYLYIMDLRTESLISRWPLPEYRKSKRGSSFLAGEASWLNGLDGHNDTGLVFATSMPDHSIHLVL 320 
WD40-rpts      WD 6_________________)                  (_________________WD 7_________________)

Query      321 WKEHC 325 
WD40-rpts           

7 WD40-repeats found in QUERY=ENSMUSP00000088541 (Len=325):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     9-45       7.25  414.06  0.00016       27.5%     51.34
  WD 2:  Seg  6    49-83       7.70  432.57  9.2e-05       30.0%     48.41
  WD 3:  Seg 10    87-125     10.15  533.82  4.0e-06       42.5%     53.68
  WD 4:  Seg 14   129-176      8.44  463.40  3.5e-05       37.5%     53.06
  WD 5:  Seg 18   183-222      5.83  355.43  0.00101       30.0%     49.58
  WD 6:  Seg 22   223-262      6.92  400.56  0.00025       10.0%     52.93
  WD 7:  Seg 26   281-320      6.09  366.25  0.00072       17.5%     43.96

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-45     -AFETSSLIGHSARVY--ALYYKD---------G---LLCTGSDDLSAKLWD
   WD 2   49-83     -GQCVYGIQTHT------CAAVKF---------D-EQKLVTGSFDNTVACWE
   WD 3   87-125    -GARTQHFRGHTGAVF--SVDYSD---------E-LDILVSGSADFAVKVWA
   WD 4  129-176    -GTCLNTLTGHTEWVT--KVVLQKCKVKSLLHSP-GDYILLSADKYEIKIWP
   WD 5  183-222    -CKCLKTLSVSEDRSICLQPRLHF---------D-GKYIVCSSAL-GLYQWD
   WD 6  223-262    FASYDILRVIKTPEVA--NLALLG---------F-GDVFALLFDNHYLYIMD
   WD 7  281-320    -KRGSSFLAGEASWLN--GLDGHN---------DTGLVFATSMPDHSIHLVL

   WD40 Template    TGECLRTLSGHTSGVT--SVSFSP---------D-GKRLVSGSEDGTIKVWD