Input parameters:

  Query = ENSMUSP00000087544 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000087544, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAALFPPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGHGGQGVIWLKTLPQGH 80  
WD40-rpts      (_______________________WD 1_______________________)   (_________________WD 2___

Query       81 QLLSQGRDLRLCLWDLEEGRNTIMDSVQLDSVGFCRGSILVRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADAR 160 
WD40-rpts      ______________)   (____________________WD 3___________________)   (_____________

Query      161 PGMPMCLGLWQTNSSLRPLLLAGYEDGSVTLWDISERKVCSQITCHEEPVMGLDFDSQKAKGISGSAGKVLAVWSLDDQQ 240 
WD40-rpts      ________WD 4____________________)   (_________________WD 5________________)   (_

Query      241 SLQVKKTHELTNPGIAEVTIRPDHKILATAGWDHRIRVFHWRTMKPLAVLAFHSAPVYCVAFAADGLLAAGSKDQRISIW 320 
WD40-rpts      _________________WD 6__________________)   (________________WD 7________________

Query      321 SLYPCP 326 
WD40-rpts      )     

7 WD40-repeats found in QUERY=ENSMUSP00000087544 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-52       7.58  427.96  0.00011       30.0%     55.07
  WD 2:  Seg  5    56-95       8.54  467.61  3.1e-05       32.5%     57.63
  WD 3:  Seg  9    99-143      6.30  375.02  0.00055       15.0%     48.05
  WD 4:  Seg 13   147-193      7.47  423.34  0.00012       25.0%     53.85
  WD 5:  Seg 17   197-235      9.12  491.28  1.5e-05       20.0%     57.21
  WD 6:  Seg 21   239-280      8.06  447.44  5.8e-05       27.5%     56.85
  WD 7:  Seg 25   284-321      8.40  461.47  3.8e-05       35.0%     52.98

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-52     MAALFPPPPGPRFVLRGT---QS-AV------NTLHF--------CPPSQAAGNPLLFSGSQNGLVHIWS
   WD 2   56-95     -RRI-------VTTLNGH---GGQGV------IWLKT--------LPQGH-----QLLSQGRDLRLCLWD
   WD 3   99-143    -GRN-------TIMDSVQ---LD-SVGFCRGSILVRG--------QQCWM-----LAVPGKGSDEVQILE
   WD 4  147-193    -KTS-------VCTLKPE---AD-AR------PGMPMCLGLWQTNSSLRP-----LLLAGYEDGSVTLWD
   WD 5  197-235    -RKV-------CSQITCH---EE-PV------MGLDF--------DSQKA-----KGISGSAGKVLAVWS
   WD 6  239-280    -QQS-------LQVKKTHELTNP-GI------AEVTI--------RPDHK-----ILATAGWDHRIRVFH
   WD 7  284-321    -MKP-------LAVLAFH---SA-PV------YCVAF--------AADG------LLAAGSKDQRISIWS

   WD40 Template    TGEC-------LRTLSGH---TS-GV------TSVSF--------SPDGK-----RLVSGSEDGTIKVWD