Input parameters:

  Query = ENSMUSP00000086730 (Len=1471)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000086730, Len=1471):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKVIQKKNHWTGRVHECTVKRGPQGELGVTVLGGAEHGEFPYVGAVAAAEAAGLPGGGEGPKLAEGELLLEVQGVRVSG 80  
WD40-rpts                                                                                      

Query       81 LPRYDVLGVIDSCKEAVTFKAVRQGGRLNKDLRHFLNQRFQKGSPDHELQQTIRDNLYRHAVPCTTRSPREGEVPGVDYS 160 
WD40-rpts                                                                                      

Query      161 FLTVKEFLDLEQSGTLLEVGTYEGNYYGTPKPPSQPVSGKVITTDALHSLQSGSKQSTPKRTKSYNDMQNAGIVHPENEE 240 
WD40-rpts                                                                                      

Query      241 EEDVPEMNSSFTADSGDQDEHTLQEATLPPVNSSILAAPITDPSQKFPQYLPLSAEDNLGPLPENWEMAYTENGEVYFID 320 
WD40-rpts                                                                                      

Query      321 HNTKTTSWLDPRCLNKQQKPLEECEDDEGVHTEELDSELELPAGWEKIEDPVYGVYYVDHINRKTQYENPVLEAKRKKQL 400 
WD40-rpts                                                                                      

Query      401 EQQQQQQQPQPPQPEEWTEDHASVVPPVAPSHPPSNPEPARETPLQGKPFFTRNPSELKGKFIHTKLRKSSRGFGFTVVG 480 
WD40-rpts                                                                                      

Query      481 GDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTS 560 
WD40-rpts                                                                                      

Query      561 LVTSVAILDKEPIIVNGQETYDSPASHSSKTGKVSSMKDARPSSPADVASNSSHGYPNDTVSLASSIATQPELITVHIVK 640 
WD40-rpts                                                                                      

Query      641 GPMGFGFTIADSPGGGGQRVKQIVDSPRCRGLKEGDLIVEVNKKNVQALTHNQVVDMLIECPKGSEVTLLVQRGGLPVPK 720 
WD40-rpts                                                                                      

Query      721 KSPKSQPLERKDSQNSSQHSVSSHRSLHTASPSHGIQVLPEYLPADAPAPDQTDSSGQKKPDPFKIWAQSRSMYENRPMS 800 
WD40-rpts                                                                                      

Query      801 PSPASGLSKGERDREINSTNFGECQIPDYQEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDEL 880 
WD40-rpts                                                                                      

Query      881 ICVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRRKVVFAVPKAENEVPSPASSHHSSNQPASLTEEKRTPQGSQNSLNT 960 
WD40-rpts                                                                                      

Query      961 VSSGSGSTSGIGSGGGGGSGVVSAVLQPYDVEIRRGENEGFGFVIVSSVSRPEAGTTFGRIIEGSPADRCGKLKVGDRIL 1040
WD40-rpts                                        (___________________WD 1__________________)   

Query     1041 AVNGCSITNKSHSDIVNLIKEAGNTVTLRIIPGDESSNATLLTNAEKIATITTTHAPSQQGTQETRTTTKPKQDSQFEFK 1120
WD40-rpts                                                                                      

Query     1121 GPQAAQEQDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERCGKMRIGDEILEINGETTKNMKHSRAIELIK 1200
WD40-rpts                                                                                      

Query     1201 NGGRRVRLFLRRGDGSVPEYDPSSDRNGPSTGAQGVPEVRPGPPDHRPHPALESSYPPELHKSSQHAEKRAHAKDPKGNR 1280
WD40-rpts                                                                                      

Query     1281 EHSKQPNEHHTWNGTSRKQDSGACRPKDRPPDAWREAQPERTATNGSKRRSPEKRREGTRSADNTLERREKHEKRREISP 1360
WD40-rpts                                                                                      

Query     1361 ERKRERSPTRRKDSSPSRRRRSLERLLDQRRSPERRRGGSPERRAKSTDRRRARSPERRRERSLDKRNRDDKVGHREREE 1440
WD40-rpts                                                                                      

Query     1441 AGLKLEAGRSPRNPPEQRRRPYKECSTDLSI 1471
WD40-rpts                                     

1 WD40-repeats found in QUERY=ENSMUSP00000086730 (Len=1471):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 24   995-1037     2.92  235.36  0.04112       27.5%     -30.55

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  995-1037   RGENEGFGFVIVSSVSRPEAGTTFGRIIEGSPADRCGKLKVGD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGS---EDGTIKVWD