Input parameters:

  Query = ENSMUSP00000086640 (Len=509)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000086640, Len=509):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 TPPSCRPLHPGRFLSAPVPVPSPLRCHPPPSAPSIPPSPGVGAEPRSRRPRRARQGHHLQRDMAGAGGGNDIQWCFSQVK 80  
WD40-rpts                                         (_________________WD 1_________________)   (_

Query       81 GAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINK 160 
WD40-rpts      ________________WD 2_________________)                       (__________________

Query      161 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 240 
WD40-rpts      _WD 3___________________)                                             (_________

Query      241 HINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 320 
WD40-rpts      ______WD 4_______________)            (_________________WD 5________________)   

Query      321 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYE 400 
WD40-rpts                      (________________WD 6________________)            (_____________

Query      401 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 480 
WD40-rpts      _______WD 7____________________)  (_________________WD 8________________)       

Query      481 ILHTAWHPKENIIAVATTNNLYIFQDKVN 509 
WD40-rpts                                   

8 WD40-repeats found in QUERY=ENSMUSP00000086640 (Len=509):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    36-75       4.95  319.25  0.00310       10.0%     25.63
  WD 2:  Seg  3    79-118      8.95  484.35  1.8e-05       15.0%     38.69
  WD 3:  Seg  7   142-185      5.74  351.88  0.00113       17.5%     45.02
  WD 4:  Seg 15   231-266      6.28  374.07  0.00057       22.5%     50.00
  WD 5:  Seg 20   279-317      6.34  376.51  0.00052       25.0%     36.56
  WD 6:  Seg 23   337-374      5.68  349.44  0.00122       22.5%     40.47
  WD 7:  Seg 27   387-432      5.59  345.45  0.00138       15.0%     42.04
  WD 8:  Seg 30   435-473      4.59  304.47  0.00490       15.0%     31.29

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   36-75     PPSPGVGA------E--PRSRRPRRARQGH--HL-QRDMAGAGGGNDIQWC
   WD 2   79-118    VKGAVDDD------V--AEADIISTVEFNH--SG-ELLATGDKGGRVVIFQ
   WD 3  142-185    HEPEFDYL------KSLEIEEKINKIRWLPQKNA-AQFLLSTNDKTIKLWK
   WD 4  231-266    ---RRIFA------N--AHTYHINSISINS--DY-ETYLS-ADDLRINLWH
   WD 5  279-317    --IKPANM------E--ELTEVITAAEFHP--NSCNTFVYSSSKGTIRLCD
   WD 6  337-374    -PSNRSFF------S--EIISSISDVKFSH--SG-RYMMTRD-YLSVKIWD
   WD 7  387-432    VHEYLRSKLCSLYEN--DCIFDKFECCWNG--SD-SVVMTGSYNNFFRMFD
   WD 8  435-473    -TKRDITL------E--ASRENNKPRTVLK--PR-KVCASGKRKKDEISVD

   WD40 Template    TGECLRTL------S--GHTSGVTSVSFSP--DG-KRLVSGSEDGTIKVWD