Input parameters:

  Query = ENSMUSP00000085896 (Len=230)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000085896, Len=230):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGIQGMELCAMAVVVLLFIAVLKQFGILEPMSMEDSSDSELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPT 80  
WD40-rpts      (________________________________________________________________________WD 1___

Query       81 GLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEE 160 
WD40-rpts      ____________________________________________________________________)           

Query      161 MLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQLFENVI 230 
WD40-rpts                                                                            

1 WD40-repeats found in QUERY=ENSMUSP00000085896 (Len=230):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-149      3.09  242.49  0.03309       27.5%     -16.51

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-149    MGIQGMELCAMAVVVLLFIAVLKQFGILEPMSMEDSSDSELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYD

   WD40 Template    TGEC-----------------------LRTLSGHTSGV-------TSVS------------FS---------------PDGKRL------------VSGSE---------------DGTIK-------------VW------------D