Input parameters:

  Query = ENSMUSP00000085812 (Len=594)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000085812, Len=594):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPINTPRRSDSAISVRSLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCAL 80  
WD40-rpts                                                                                      

Query       81 KSEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCHAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRPVRCPNN 160 
WD40-rpts                                                         (____________________WD 1____

Query      161 PSCPPLLKMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLR 240 
WD40-rpts      ________________)                               (_______________________________

Query      241 SMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQ 320 
WD40-rpts      ___________WD 2__________________________________________)           (__________

Query      321 GPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIR 400 
WD40-rpts      _______WD 3________________)    (________________WD 4_______________)   (_______

Query      401 AHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQ 480 
WD40-rpts      ________WD 5_______________)     (_______________WD 6_______________)   (_______

Query      481 TSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICT 560 
WD40-rpts      _________WD 7_______________)   (__________________WD 8_________________)   (___

Query      561 QTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC 594 
WD40-rpts      _____________WD 9_______________) 

9 WD40-repeats found in QUERY=ENSMUSP00000085812 (Len=594):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   132-177      4.50  300.55  0.00553       10.0%     -7.92
  WD 2:  Seg 10   209-298      3.57  262.06  0.01816       10.0%     21.54
  WD 3:  Seg 12   310-348      8.28  456.65  4.4e-05       42.5%     48.77
  WD 4:  Seg 16   353-389      7.93  442.41  6.8e-05       42.5%     48.04
  WD 5:  Seg 20   393-428      5.67  349.04  0.00123       32.5%     48.29
  WD 6:  Seg 24   434-469      4.82  313.81  0.00367       30.0%     47.77
  WD 7:  Seg 28   473-509      6.75  393.58  0.00031       25.0%     52.36
  WD 8:  Seg 32   513-553      8.48  464.75  3.4e-05       35.0%     56.79
  WD 9:  Seg 36   557-593      7.86  439.29  7.5e-05       40.0%     50.17

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  132-177    -RGCPFTIKL-----------SA---------------------------RKD------------HESSC--DYRPVRCPNNPSCPPLLKMNLEAHLKE
   WD 2  209-298    EGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEF--RRDASMLNDELSHINARLNM-------
   WD 3  310-348    -FKCKGTFVG-----------HQ---------------------------GPV------------WCLCV--YSMGDLLFSGSSDKTIKVWD-------
   WD 4  353-389    -YKCQKTLEG-----------HD---------------------------GIV--------------LAL--CIQGCKLYSGSADCTIIVWD-------
   WD 5  393-428    -LQKVNTIRA-----------HD---------------------------NPV------------CTLVS--SHN--MLFSGS-LKAIKVWD-------
   WD 6  434-469    -LKLKKELTG-----------LN---------------------------HWV------------RALVA--A--QSYLYSGS-YQTIKIWD-------
   WD 7  473-509    -LDCIHVLQT-----------SG---------------------------GSV------------YSIAV--T--NHHIVCGTYENLIHVWD-------
   WD 8  513-553    -KEQVRTLTG-----------HV---------------------------GTV------------YALAVISTPDQTKVFSASYDRSLRVWS-------
   WD 9  557-593    -MICTQTLLR-----------HQ---------------------------GSV------------TALAV--SRG--RLFSGAVDSTVKVWT-------

   WD40 Template    TGECLRTLSG-----------HT---------------------------SGV------------TSVSF--SPDGKRLVSGSEDGTIKVWD-------