Input parameters:

  Query = ENSMUSP00000085549 (Len=527)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000085549, Len=527):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIES 80  
WD40-rpts                                                                                      

Query       81 LSLIDAVMPDVVQTRQQAFREKLAQQQANAAAAAAAAAATATSTAATTPAAAAQQNPPKNGEATVNGEENGAHAINNHSK 160 
WD40-rpts                                                      (_________________WD 1__________

Query      161 PMEIDGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKD 240 
WD40-rpts      ______)    (_________________WD 2________________)                  (___________

Query      241 VTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFH 320 
WD40-rpts      _____WD 3________________)  (_________________WD 4________________)   (_________

Query      321 SAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDL 400 
WD40-rpts      _______WD 5________________)   (_________________WD 6________________)   (______

Query      401 QAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVH 480 
WD40-rpts      _______________WD 7_____________________)   (_________________WD 8______________

Query      481 IWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK 527 
WD40-rpts      __)   (________________WD 9________________)   

9 WD40-repeats found in QUERY=ENSMUSP00000085549 (Len=527):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   129-167      7.00  403.64  0.00023       10.0%     35.27
  WD 2:  Seg  6   172-210      8.79  477.86  2.3e-05       32.5%     48.80
  WD 3:  Seg 11   229-266      7.63  429.95  1.0e-04       27.5%     42.00
  WD 4:  Seg 14   269-307      9.48  506.22  9.4e-06       25.0%     53.97
  WD 5:  Seg 18   311-348      6.85  397.51  0.00027       22.5%     52.90
  WD 6:  Seg 22   352-390     10.11  532.14  4.2e-06       35.0%     55.72
  WD 7:  Seg 26   394-441      8.31  457.79  4.2e-05       32.5%     54.08
  WD 8:  Seg 30   445-483     10.80  560.73  1.7e-06       50.0%     55.67
  WD 9:  Seg 34   487-524      7.62  429.33  0.00010       22.5%     54.61

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  129-167    -PAAAAQQNPPKNGEATVNGEENGA---------HAINNHSKPMEIDGD
   WD 2  172-210    -PSKATVLRGHESEVFICAWNPVSD---------LLASGSGDSTARIWN
   WD 3  229-266    REG--GHDVPSNKDVTSLDWNSDGT---------LLATGSYDGFARIWT
   WD 4  269-307    -GNLASTLGQHKGPIFALKWNKKGN---------YILSAGVDKTTIIWD
   WD 5  311-348    -GEAKQQFPFHSAPALDVDWQ-NNT---------TFASCSTDMCIHVCR
   WD 6  352-390    -DRPVKTFQGHTNEVNAIKWDPSGM---------LLASCSDDMTLKIWS
   WD 7  394-441    -DACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWD
   WD 8  445-483    -GVCIHTLTKHQEPVYSVAFSPDGK---------YLASGSFDKCVHIWN
   WD 9  487-524    -GSLVHSYRGT-GGIFEVCWNARGD---------KVGASASDGSVCVLD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK---------RLVSGSEDGTIKVWD