Input parameters:

  Query = ENSMUSP00000085379 (Len=350)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000085379, Len=350):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRRRGVELYRAPFPLYALRIDPKTGLLIAAGGGGAAKTGIKNGVHFLQLELINGCLSASLLHSHDTETRATMNLALAGD 80  
WD40-rpts      (__________________WD 1_________________)          (___________________WD 2_____

Query       81 ILAAGQDAQCQLLRFQVHQQKGSKAEKSGSKEQGPRQRKGAPPAEKKSGAQVHPEGVELKVKNLEAVQTDFSNEPLQKVV 160 
WD40-rpts      _____________)   (_________________WD 3________________)       (________________

Query      161 CFNHDNTLLATGGTDGHVRVWKVPSLEKVLEFKAHEGEIGDLTLGPDGKLVTVGWDFKASVWQKDQLVTQLQWQENGPAS 240 
WD40-rpts      _WD 4________________)   (________________WD 5________________)          (______

Query      241 SNTPYRYQACRFGQVPDQLGGLRLFTVQIPHKRLRQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGLGTV 320 
WD40-rpts      __________________WD 6_______________________)   (_________________WD 7_________

Query      321 TGSVAIYIAFSLQGVFLYGFCSCCVSALLL 350 
WD40-rpts      _______)                      

7 WD40-repeats found in QUERY=ENSMUSP00000085379 (Len=350):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-41       7.48  423.52  0.00012       12.5%     45.20
  WD 2:  Seg  5    52-94       3.39  254.72  0.02275       15.0%     53.55
  WD 3:  Seg  9    98-136      7.03  405.19  0.00022        2.5%     16.99
  WD 4:  Seg 13   144-182      9.36  501.22  1.1e-05       27.5%     55.33
  WD 5:  Seg 17   186-223      7.90  440.99  7.1e-05       27.5%     53.58
  WD 6:  Seg 22   234-286      4.28  291.29  0.00737       15.0%     29.58
  WD 7:  Seg 25   290-328      8.80  478.11  2.2e-05       25.0%     59.07

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-41     MG----RRRGVELYRAPFPLYALRIDPKTGLLIAAGGGGA---------AKTGI
   WD 2   52-94     LINGCLSASLLHSHDTE-TRATMNLALAGDILAAGQ-DAQ---------CQLLR
   WD 3   98-136    -H----QQKGSKAEKSG-SKEQGPRQRKGAPPAEKKSGAQ---------VHPEG
   WD 4  144-182    -L----EAVQTDFSNEP-LQKVVCFNHDNTLLATGGTDGH---------VRVWK
   WD 5  186-223    -L----EKVLEFKAHEG-EIGDLTLGPDGK-LVTVGWDFK---------ASVWQ
   WD 6  234-286    QENGPASSNTPYRYQAC-RFGQVPDQLGGLRLFTVQIPHKRLRQPPPCYLTAWD
   WD 7  290-328    -F----LPLRTRSCGHE-VISCLSVSDSGTFLGLGTVTGS---------VAIYI

   WD40 Template    TG----ECLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGT---------IKVWD