Input parameters:

  Query = ENSMUSP00000083082 (Len=330)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000083082, Len=330):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDTGHYSINDESRGHGHSDEEDEEQPRHRGQRKRASRDQDSSDDERALEDWVSSETTALPRPRWQALPALRERELGSSA 80  
WD40-rpts                                                          (____________________WD 1___

Query       81 RFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPN 160 
WD40-rpts      ________________)_______________WD 2_________________)    (__________________WD 

Query      161 SGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKE 240 
WD40-rpts      3_________________)        (________________WD 4________________)(______________

Query      241 KEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKIDENENNGVLKKFCPHHLSSWPVTMMKTFTFSTLLTVMGPSILR 320 
WD40-rpts      _______WD 5_____________________)         (_________________WD 6________________

Query      321 DTKAIEIMLQ 330 
WD40-rpts      )         

6 WD40-repeats found in QUERY=ENSMUSP00000083082 (Len=330):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    53-97       4.20  288.19  0.00811        7.5%     10.82
  WD 2:  Seg  3    95-134     11.59  593.44  6.2e-07       37.5%     52.12
  WD 3:  Seg  7   139-179      7.41  420.68  0.00013       30.0%     50.47
  WD 4:  Seg 12   188-225      7.20  411.93  0.00017       17.5%     44.01
  WD 5:  Seg 15   226-273      6.46  381.47  0.00045       12.5%     53.48
  WD 6:  Seg 19   283-321      6.11  367.03  0.00070       12.5%     46.76

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   53-97     VSS-------ETTALPRPRWQALPALRERE-LG--S-SARFVYEACGARVFVQRFR
   WD 2   95-134    RFR-------LQHGL-EGHTGCVNTLHFNQ-RG--T-WLASGSDDLK----VVVWD
   WD 3  139-179    -QP-------VLDFE-SGHKSNVFQAKFLP-NSGDS-TLAMCARDGQ----VRVAE
   WD 4  188-225    N----------TKRV-AQHKGASHKLALEP-DS--PCTFLSAGEDAV----VFTID
   WD 5  226-273    LRQDRPASKLVVTKE-KEKKVGLYTIYVNPANT--H-QFAVGGRDQY----VRIYD
   WD 6  283-321    -NG-------VLKKF-CPHHLSSWPVTMMK-TF--T-FSTLLTVMGP----SILRD

   WD40 Template    TGE-------CLRTL-SGHTSGVTSVSFSP-DG--K-RLVSGSEDGT----IKVWD