WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: ENSMUSP00000082912 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000082912 (Len=1498) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000082912, Len=1498): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAALAAGGYTRSDTIEKLSSVMAGVPARRNQSSPPPAPPLCLRRRTRLAAAPEDTVQNRVTLEKVLGITAQNSSGLTCDP 80
WD40-rpts (________________WD 1________________)
Query 81 GTGHVAYLAGCVVVVLNPKENKQQHIFNTTRKSLSALAFSPDGKYIVTGENGHRPAVRIWDVEEKTQVAEMLGHKYGVAC 160
WD40-rpts (__________________WD 2_________________) (_______________
Query 161 VAFSPNMKHIVSMGYQHDMVLNVWDWKKDIVVASNKVSCRVIALSFSEDSSYFVTVGNRHVRFWFLEASTEAKVTSTVPL 240
WD40-rpts ___WD 3_________________) (________________WD 4________________)
Query 241 VGRSGILGELHNNIFCGVACGRGRMAGNTFCVSYSGLLCQFNEKRVLDKWINLKVSLSSCLCVSDELIFCGCTDGIVRIF 320
WD40-rpts (_________________WD 5_________________
Query 321 QAHSLLYLTNLPKPHYLGVDVAHGLDSSFLFHRKAEAVYPDTVALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSE 400
WD40-rpts ) (______________WD 6______________)(____________
Query 401 LFHSSFVWNVEVYPEFEDQRACLPSGTFLTCSSDNTIRFWNLDSASDTRWQKNIFSDSLLKVVYVENDIQHLQDLSHFPD 480
WD40-rpts ____________WD 7________________________)
Query 481 RGSENGTPMDMKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELIKVEAHDAEVLCLEYSKPETGVTLLASASRDRL 560
WD40-rpts (_________________WD 8________________) (__________________WD 9______________
Query 561 IHVLNVEKNYNLEQTLDDHSSSITAIKFAGTRDVQMISCGADKSIYFRSAQQASDGLHFVRTHHVAEKTTLYDMDIDITQ 640
WD40-rpts ____)(___________________WD10___________________)(_____________________WD11_____
Query 641 KYVAVACQDRNVRVYNTVSGKQKKCYKGSQGDEGSLLKVHVDPSGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVTG 720
WD40-rpts _______________) (_________________WD12________________) (_______________
Query 721 MKFTYDCRHLITVSGDSCVFIWHLGPEITTCMKQHLLEINHQEQQQQPKDQKWSGPPSQETYASTPSEIRSLSPGEQTED 800
WD40-rpts __WD13________________)
Query 801 EMEEECEPEELLKTPSKDSLDPDPRCLLTNGKLPLWAKRLLGDDDVADSSAFHAKRSYQPHGRWAERAEQEPLKTILDAW 880
WD40-rpts (______________________WD14_____________________)
Query 881 SLDSYFTPMKPENLQDSVLDSVEPQNLAGLLSELGSPKEDNRGHPSYLPLQREATEASELILCSPEAEVSLTGMHREYYE 960
WD40-rpts (________________WD15_______________)
Query 961 EETEAGPEDQQGDTYLRVSSVSSKDQSPPEDSGESEAELECSFAAAHSSAPQTDPGPHLTMTAEYPSTEELSQPELPGLG 1040
WD40-rpts
Query 1041 NGSLPQTPEQEKFLRHHFETLTDAPTEELFHGSLGDIKISETEDYFFNPRLSISTQFLSRLQKTSRCPPRLPLHLMKSPE 1120
WD40-rpts
Query 1121 AQPVGQGGNQPKAGPLRAGTGYMSSDGTNVLSGQKAEETQEALSLLDRKPPTPTSVLTTGREQSISAPSSCSYLESTTSS 1200
WD40-rpts
Query 1201 HAKTTRSISLGDSEGPVTAELPQSLHKPLSPGQELQAIPTTVALTSSIKDHEPAPLSWGNHEARASLKLTLSSVCEQLLS 1280
WD40-rpts
Query 1281 PPPQEPPITHVWSQEPVDVPPSMAVTVASFCAPSPVDMSTLGLHSSMFLPKTSASGPLTPPAHLQLLETRSRVPGSTAAL 1360
WD40-rpts
Query 1361 LEPTPDASGVIADSPGHWDTEVPTPELLGSVESVLHRLQTAFQEALDLYRMLVSSSQLGPEQQQAQTELASTFHWILNQL 1440
WD40-rpts
Query 1441 EASNCMAAANLAPPQTLPSPDPLSLPTLCPLASPNLQALLEHYSELLVQAVRRKARGD 1498
WD40-rpts
 15 WD40-repeats found in QUERY=ENSMUSP00000082912 (Len=1498): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 24-61 3.06 241.16 0.03446 15.0% 24.57 WD 2: Seg 9 101-141 6.35 376.80 0.00052 25.0% 56.69 WD 3: Seg 13 145-185 7.62 429.27 0.00010 37.5% 55.85 WD 4: Seg 17 188-225 4.80 313.07 0.00375 17.5% 52.45 WD 5: Seg 25 282-321 5.46 340.25 0.00162 10.0% 50.51 WD 6: Seg 31 354-387 5.30 333.71 0.00198 17.5% 48.17 WD 7: Seg 34 388-441 5.37 336.50 0.00182 25.0% 50.29 WD 8: Seg 41 482-520 7.60 428.63 0.00010 30.0% 46.86 WD 9: Seg 44 524-565 6.23 372.13 0.00060 25.0% 56.90 WD10: Seg 48 566-609 6.19 370.50 0.00063 22.5% 52.28 WD11: Seg 52 610-656 4.70 308.63 0.00431 10.0% 46.56 WD12: Seg 56 663-701 6.92 400.32 0.00025 22.5% 51.04 WD13: Seg 60 705-743 8.97 485.28 1.8e-05 32.5% 57.45 WD14: Seg 68 830-878 4.09 283.55 0.00936 12.5% 25.52 WD15: Seg 70 884-920 2.91 234.94 0.04165 15.0% 2.90Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 24-61 -GV---P-----A---------RRNQ-------SSPPPAPPLCLRRRT----------RLAAAP--E--DTVQNRVT WD 2 101-141 -NK---Q-----Q---------HIFN-------TTRKSLSALAFSPDGK---------YIVTGE--NGHRPAVRIWD WD 3 145-185 -KT---Q-----V---------AEML-------GHKYGVACVAFSPNMK---------HIVSMGYQH--DMVLNVWD WD 4 188-225 -KD---I-----V---------VASN-------KVSCRVIALSFSEDSS---------YFVTVG-----NRHVRFWF WD 5 282-321 NEK---R-----V---------LDKW-------INLKVSLSSCLCVSDE---------LIFCGC--T--DGIVRIFQ WD 6 354-387 -----------------------KAE-------AVYPDTVALTFDPVHQ---------WLSCVY--K--DHSIYIWD WD 7 388-441 VKD---IDEVSKI---------WSEL-------FHSSFVWNVEVYPEFEDQRACLPSGTFLTCS--S--DNTIRFWN WD 8 482-520 -GS---E-----N---------GTPM-------DMKAGVRVMQVSPDGQ---------HLASGD--R--SGNLRIHE WD 9 524-565 -MD---E-----L---------IKVE-------AHDAEVLCLEYSKPET------GVTLLASAS--R--DRLIHVLN WD10 566-609 VEKNYNL-----E---------QTLD-------DHSSSITAIKFAGTRD--------VQMISCG--A--DKSIYFRS WD11 610-656 AQQ---A-----S---------DGLHFVRTHHVAEKTTLYDMDIDITQK---------YVAVAC--Q--DRNVRVYN WD12 663-701 -KK---C-----Y---------KGSQ-------GDEGSLLKVHVDPSGT---------FLATSC--S--DKSISLID WD13 705-743 -GE---C-----V---------AKMF-------GHSEIVTGMKFTYDCR---------HLITVS--G--DSCVFIWH WD14 830-878 NGK---L-----PLWAKRLLGDDDVA-------DSSAFHAKRSYQPHGR---------WAERAE--Q--EPLKTILD WD15 884-920 ------S-----Y---------FTPM-------KPENLQDSVLDSVEPQ---------NLAGLL--S--ELGSPKED WD40 Template TGE---C-----L---------RTLS-------GHTSGVTSVSFSPDGK---------RLVSGS--E--DGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |