Input parameters:

  Query = ENSMUSP00000082895 (Len=1181)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000082895, Len=1181):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLETQTDDSKLRGLAAPSNLSMNQNLEGHSGAVQVVTWN 80  
WD40-rpts      (__________________WD 1__________________)                  (_________________WD

Query       81 EQYQKLTTSDQNGLIIVWMLYKGSWYEEMINNRNKSVVRSMSWNADGQKICIVYEDGAVIVGSVDGNRIWGKDLKGIQLC 160 
WD40-rpts       2________________)(___________________WD 3___________________)  (______________

Query      161 HVTWSADSKILLFGMANGEIHIYDNQGNFIMKMKLNCLVNVTGAISIAGIHWYHGTEGYVEPDCPCLAICFDNGRCQIMR 240 
WD40-rpts      ___WD 4________________)            (___________________WD 5___________________)

Query      241 HENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDINIVQFYTPFGEHLGTLKVPGKQMCSLSWEGGGLKIAL 320 
WD40-rpts        (_________________WD 6________________)           (________________WD 7_______

Query      321 AVDSFIYFANIRPDYKWGYCSNTVVYAYTRPDRPEYCVVFWDTKNSEKYVKYVKSLISITTCGDFCILATKADENHPQEE 400 
WD40-rpts      _________)                                  (________________WD 8_______________

Query      401 NEMETFGATFVLVLCNSIGTPLDPKYIDLVPLFVAMTKTHVIAASKEAFYTWQYRVAKKLTALEINQITRSRKEGRERIY 480 
WD40-rpts      )                                                                               

Query      481 HVDDVPSGSVDGVFDYSKAIQGTRDPICAITASDKTLIVGRESGVIQRYSFPNVALIQKYSLDCRACQLSLNCNSSRLAI 560 
WD40-rpts                (_________________WD 9_________________)  (_________________WD10______

Query      561 IDIAGVLTFFDLDTRVTDSTGQQVVGELLKLERKDVWDMKWAKDNPDLFAMMEKTRMYVFRNLDPEEPIQTSGYICNFED 640 
WD40-rpts      __________)                                                                     

Query      641 LEIKSVLLDEILKDPEHPSKDYIMNFEIRSLRDSRALIEKVGIEDASQFIEDNPHPRLWRLLAEAALQKLDLYTAQQAFV 720 
WD40-rpts                                                                                      

Query      721 RCKDYQGIKFVKLLGNLQSESMKQAEVIAYFGRFEDAERMYQDMDRRDLAIGLRMKLGDWFRVLQLLKTGSGDADDSLLE 800 
WD40-rpts                                                                                      

Query      801 QANNAIGEYFADRQKWQNAVQYYVKGRNQERLAECYYMLEDYEGLETLANSLPENHKLLPEIAQMFVRVGMCEQAVSAFL 880 
WD40-rpts                                                                                      

Query      881 KCNQPKAAVDTCVHLNQWNKAVELAKSHSMKEIGSLLARYASHLLEKNKTLDAIELYRKASYFFDAAKLMYKIADEEAKK 960 
WD40-rpts                                                                                      

Query      961 RTKPLRVKKLYVLSALLIEQYHEQMKNAQRGKVKGKNSEATSALAGLLEEEVLSTTSRFTDNAWRGAEAYHFFILAQRQL 1040
WD40-rpts                                                                                      

Query     1041 YEGYVDTALKTALHLRDYEDIIPSVEIYSLLALCACASRAFGTCSKAFIKLESLETLSAEQKQQYEDLALEIFTKHTPKD 1120
WD40-rpts                                                                                      

Query     1121 NRKSELNSLLEGGEGKLPTCIATGSPIIEYQFWVCKVCKHYVLAQEISNYNFCPLCHSSVE 1181
WD40-rpts                                                                   

10 WD40-repeats found in QUERY=ENSMUSP00000082895 (Len=1181):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       5.71  350.58  0.00117       22.5%     54.10
  WD 2:  Seg  5    61-99       6.37  377.99  0.00050       25.0%     47.10
  WD 3:  Seg  8   100-143      5.34  335.18  0.00189       25.0%     50.95
  WD 4:  Seg 12   146-184      5.88  357.69  0.00094       25.0%     55.83
  WD 5:  Seg 17   197-240      3.05  240.77  0.03487       15.0%     35.01
  WD 6:  Seg 20   243-281      3.40  255.19  0.02243       10.0%     37.41
  WD 7:  Seg 25   293-330      4.97  320.13  0.00302       25.0%     54.99
  WD 8:  Seg 32   365-401      3.11  243.30  0.03228       10.0%     33.21
  WD 9:  Seg 42   491-530      2.78  229.57  0.04901       20.0%     44.44
  WD10:  Seg 46   533-571      3.99  279.35  0.01066       15.0%     50.69

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-42     MF--F----YL--SKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLR
   WD 2   61-99     -L--S----MN----QNLEGHSGAVQVVTWNEQYQKLTTSDQNGLIIVWM
   WD 3  100-143    LY--K----GSWYEEMINNRNKSVVRSMSWNADGQKICIVYEDGAVIVGS
   WD 4  146-184    -G--N----RI----WGKDLKGIQLCHVTWSADSKILLFGMANGEIHIYD
   WD 5  197-240    CL--VNVTGAI----SIAGIHWYHGTEGYVEPDCPCLAICFDNGRCQIMR
   WD 6  243-281    -N--D----QN----PVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDK
   WD 7  293-330    -G--E----HL----GTLKVPGKQMCSLSWEGGGLKIALAV-DSFIYFAN
   WD 8  365-401    NS--E-----------KYVKYVKSLISITTCGDFCILATKADENHPQEEN
   WD 9  491-530    DGVFD----YS----KAIQGTRDPICAITASDKT--LIVGRESGVIQRYS
   WD10  533-571    -N--V----AL----IQKYSLDCRACQLSLNCNSSRLAIIDIAGVLTFFD

   WD40 Template    TG--E----CL----RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD