Input parameters:

  Query = ENSMUSP00000082822 (Len=372)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000082822, Len=372):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWT 80  
WD40-rpts      (_______________WD 1_______________)(___________________WD 2___________________)

Query       81 LKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAG 160 
WD40-rpts           (_________________WD 3________________) (____________________WD 4__________

Query      161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLVDADKKMAVATL 240 
WD40-rpts      _________)                     (_________________WD 5________________)   (______

Query      241 ASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLSFGGRLDVPKQSSQRGMTARERFQNLDKKASSEGGAATGAG 320 
WD40-rpts      __________WD 6________________)   (_________________WD 7________________)(______

Query      321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKSLESALKDLKIK 372 
WD40-rpts      ______________WD 8___________________)              

8 WD40-repeats found in QUERY=ENSMUSP00000082822 (Len=372):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       6.60  387.38  0.00037        5.0%     41.71
  WD 2:  Seg  5    37-80       8.92  483.18  1.9e-05       25.0%     52.87
  WD 3:  Seg  9    86-124      7.71  433.31  9.0e-05       12.5%     53.60
  WD 4:  Seg 13   126-170      8.36  459.87  3.9e-05       25.0%     52.86
  WD 5:  Seg 17   192-230      7.96  443.58  6.5e-05       32.5%     58.28
  WD 6:  Seg 21   234-271      6.91  399.97  0.00025       17.5%     54.68
  WD 7:  Seg 25   275-313      4.15  285.96  0.00869       10.0%     37.62
  WD 8:  Seg 29   314-358      6.70  391.38  0.00033       27.5%     48.75

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     -------------MAYH-SFLVEPISCHAWNKDRT----QIAICPNNHEVHIYE
   WD 2   37-80     KSGAKWN-----KVHEL-KEHNGQVTGIDWAPESN----RIVTCGTDRNAYVWT
   WD 3   86-124    -W----K-----PTLVI-LRINRAARCVRWAPNEN----KFAVGSGSRVISICY
   WD 4  126-170    EQ----ENDWWVCKHIK-KPIRSTVLSLDWHPNNV----LLAAGSCDFKCRIFS
   WD 5  192-230    -G----E-----LMFES-SSSCGWVHGVCFSASGS----RVAWVSHDSTVCLVD
   WD 6  234-271    -K----M-----AVATL-ASETLPLLAVTFITENS----LVAAGH-DCFPVLFT
   WD 7  275-313    -A----A-----VTLSF-GGRLDVPKQSSQRGMTA----RERFQNLDKKASSEG
   WD 8  314-358    GA----A-----TGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD

   WD40 Template    TG----E-----CLRTL-SGHTSGVTSVSFSPDGK----RLVSGSEDGTIKVWD