Input parameters:

  Query = ENSMUSP00000082668 (Len=532)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000082668, Len=532):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLSVSRILRRKNLLVTGGLDRIIRVWNPYLPGKPTGVLRGHRAPVMYVHVAFEENKVFSMSADNTVKVWDLETHGCCCT 80  
WD40-rpts      (___________WD 1___________)    (_________________WD 2________________)   (_____

Query       81 ISSKASGIKGELTACLYLPGPRALCVATGTLAFLHLKVGSVPESHLVRSHQEPVVCCRYNPAFRHVVSCCEASVVKVWDF 160 
WD40-rpts      ______________WD 3__________________)   (_________________WD 4________________) 

Query      161 ETGRQVSEFIGTHGNAGITCLTFDSSGRRLVTGGRDGCLKIWSYNNGHCLHTLQHDENQSEVCDCTYMEVNRNRCVIAVG 240 
WD40-rpts        (__________________WD 5_________________)   (___________________WD 6__________

Query      241 WDRRINVYFDIPRDFHHFRKPQPHWQDDLNHGHKEDILCVAQCPPFLLATSSYDGEIIVWNVISGHMYCKLNTPSPMDGQ 320 
WD40-rpts      ________)              (________________WD 7________________)          (________

Query      321 DHREGPDRSVSQLAFLKTRLTKLDSASAALISNGPGGSVCFWKLFSGSGLVANFTPSREKAQVSGIVVTSGDTLAYLADQ 400 
WD40-rpts      _______________WD 8_______________________)(____________________WD 9____________

Query      401 HGFIHVYDIQEYGLQGTELQAPNTVTSWRAHVSMVTSLELIEGGSIVLSSSLDCTVRLWSQDGAYIGTFGQNHPWDVFTP 480 
WD40-rpts      _______)             (_________________WD10________________)(________________WD1

Query      481 DSWGHPRVPFEILTDPRSMPTHRVLETDVPAGCLEGRQEQDHGTEEKDPCEG 532 
WD40-rpts      1________________)                                  

11 WD40-repeats found in QUERY=ENSMUSP00000082668 (Len=532):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-28       4.62  305.60  0.00473       17.5%     41.93
  WD 2:  Seg  4    33-71       9.33  500.14  1.1e-05       35.0%     54.58
  WD 3:  Seg  8    75-117      6.49  382.66  0.00043       20.0%     55.72
  WD 4:  Seg 12   121-159      8.84  479.88  2.1e-05       25.0%     54.10
  WD 5:  Seg 16   163-203      8.62  470.86  2.8e-05       35.0%     55.98
  WD 6:  Seg 20   207-249      6.07  365.55  0.00074       20.0%     56.61
  WD 7:  Seg 25   264-301      6.57  386.13  0.00039       27.5%     46.90
  WD 8:  Seg 29   312-363      4.74  310.55  0.00406       17.5%     44.34
  WD 9:  Seg 33   364-408      7.34  417.93  0.00014       17.5%     51.82
  WD10:  Seg 37   422-460      8.40  461.78  3.7e-05       27.5%     53.84
  WD11:  Seg 41   461-498      3.46  257.72  0.02075        7.5%     16.61

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-28     -----------------------ML----LSVSRI--------L----RRKNLLVTGGLDRIIRVWN
   WD 2   33-71     -G----K-----PTGVLRGH--RAP----VMYVHV--------A----FEENKVFSMSADNTVKVWD
   WD 3   75-117    -H----G-----CCCTISSK--ASGIKGELTACLY--------L----PGPRALCVATGTLAFLHLK
   WD 4  121-159    -V----P-----ESHLVRSH--QEP----VVCCRY--------N----PAFRHVVSCCEASVVKVWD
   WD 5  163-203    -G----R-----QVSEFIGTHGNAG----ITCLTF--------D----SSGRRLVTGGRDGCLKIWS
   WD 6  207-249    -G----H-----CLHTLQHD--ENQ----SEVCDC--------TYMEVNRNRCVIAVGWDRRINVYF
   WD 7  264-301    -H----W-----QDDLNHGH--KED----ILCVAQ--------C----PPF-LLATSSYDGEIIVWN
   WD 8  312-363    NTPSPMD-----GQDHREGP--DRS----VSQLAFLKTRLTKLD----SASAALISNGPGGSVCFWK
   WD 9  364-408    LF----SGSGLVANFTPSRE--KAQ----VSGIVV--------T----SGDTLAYLADQHGFIHVYD
   WD10  422-460    -P----N-----TVTSWRAH--VSM----VTSLEL--------I----EGGSIVLSSSLDCTVRLWS
   WD11  461-498    ------Q-----DGAYIGTF--GQN----HPWDVF--------T----PDSWGHPRVPFEILTDPRS

   WD40 Template    TG----E-----CLRTLSGH--TSG----VTSVSF--------S----PDGKRLVSGSEDGTIKVWD