Input parameters:

  Query = ENSMUSP00000081690 (Len=1683)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000081690, Len=1683):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSLQMKQFSVLLWKNFLLKSRNVVGLVVEIILIFLLFVWTLTVRRISKKTSISDVIFNPILLTLPKFLNENFDYELAYV 80  
WD40-rpts                                                                                      

Query       81 PSESNAARNITEMVKKDLNFNFKVQGFPSEESFERYIKYENKDAHVLAAIVFDHKFKTSNERLPLQVKYSLRFGRIYDPE 160 
WD40-rpts                                                                                      

Query      161 NLFQPSKYQKEIEWNTSTLFPSVPSLGPRNFLENDGGNPGYIREGFLIVQHSVDKAIMMYHSGRAAEDIFANTTIYAERF 240 
WD40-rpts                                                                                      

Query      241 PHPAFIHDSFLWTFIAMFPWTILFTFTQMALVIVGTIMLEKEKRLKEYQLMVGLSNAMLWVSYFITFLLMYFIIICLLCG 320 
WD40-rpts                                                                                      

Query      321 ILFLKITHERVFQHSDPLFIAFYFMCFAVSSVLLGFLISTLFNKASLATSIAGFLHFLTFFPYLILYHKYDQISLSGKLA 400 
WD40-rpts                                                                                      

Query      401 LCLITNTALAFGTDLICKLEMKGHGAQWNNFATKVNADDDLTLAHIIGMFLFSAFLYGLVAWYLDAVFPGTYGVPKPWNF 480 
WD40-rpts                                                                                      

Query      481 FLQKAYWFGEPALSREESQVSDLLSSDFMEPEPVGLVAGIRIQHLYKEFILKNSTLMAVNDLSLNLYEGQITVLLGHNGA 560 
WD40-rpts                                                                                      

Query      561 GKTTTLSILTGLYLPTRGKVYISGYDISSDMVQIRKSLGLCPQDDLLFPMLTVSEHLHFYCVIKGIPLQNQSRETNRMLT 640 
WD40-rpts                                                                                      

Query      641 SFGLLQQSNTMSKDLSGGMKRKLSIIIALIGDTKVVILDEPTSGMDPVSRRATWDLLQHYKKDRTILLTTHHMDEADVLG 720 
WD40-rpts                                                                                      

Query      721 DRIAILVMGILKCCGSSLFLKKLYGVGYHLVIVKTPDSNDEKIFQLIKNYIPTAKMETNVAAELSFILPKEHTHRFAELF 800 
WD40-rpts                                                                                      

Query      801 TDLEEKQEELGISGFGVSMTTMDEVFFKVSNLEDLKLNTEIAPSASIVSQSSNEDNQNMNVPRNFERPGYSRRHLDSSFN 880 
WD40-rpts                                                                                      

Query      881 AGWSLYIQQFRAMFIKRVMFSWRYWKLLLLQLLALLGLMYLLIKGISFSVPKEPARVMDLEQYGETIVPFSVSGDPNLTQ 960 
WD40-rpts                                                                                      

Query      961 ILTKNLETMLKAKKQKIHEVQGDMKNYLLTSKDCIYSCIVAFSLDVTTEEKTFIFWFNNEAYHAAPLSLSILDNIIYKYL 1040
WD40-rpts                                                                                      

Query     1041 SGPDATITVSNNPQPQRVTKDKSNERSISGIQIVFNLLFGMSIFTSGFCLMTVTERVSKAKHIQFVSGVYTLNFWLSALL 1120
WD40-rpts                                                                                      

Query     1121 WDLIIHFVACVLLLVVFLYTDVDILLEKYHFLDTMFILMLFGWSIIPFIYLLSFWYNNSTNAYIKIFVFNHCLGFISIIV 1200
WD40-rpts                                                                                      

Query     1201 DAVVQIIPDIKTSTKNLILNSMLLLPIYNFGMSIYKYYNIHEIRKLCSSLGYINTIPSCKSQIIDIPIYSMNQKAIGRHV 1280
WD40-rpts                                                                                      

Query     1281 TAMAATGLIYFILIILLETTSWNLKIFIYRYVLFGIYRIFYKARMSEELSGYSEEEDVQNERETILNHPWRSLNSTVLIK 1360
WD40-rpts                                                                                      

Query     1361 ELIKIYFKIPPTLAVRNISVAIQKEECFGLLGLNGAGKTTTFKILTGEEIATSGDVFIEGYSITRNILKVRSKVGYCPQF 1440
WD40-rpts                             (__________________________WD 1__________________________

Query     1441 DALLDYMTSREILTMYARVWGIPENSIRAYVDNLLKMLYLKPQADKFIYTLSGGNKRRLSTAIAIMGNSTVVFLDEPSTG 1520
WD40-rpts      )                                                                               

Query     1521 MDPLARRMLWNAVIKTRESGKVIIITSHSMEECEALCTRLAIMVQGKFVCLGSPQHLKNKFGNIYTMTIKFKTDTDDNTV 1600
WD40-rpts                                                                                      

Query     1601 QDLKDFIAEVFPGSDLKQENQGILNYYIPSKNNSWGKVFGILEKAKEDYNLEDYSISQITLEQVFLTFANPDNPRSGYEK 1680
WD40-rpts                                                                                      

Query     1681 AVP 1683
WD40-rpts         

1 WD40-repeats found in QUERY=ENSMUSP00000081690 (Len=1683):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 24  1384-1441     2.88  233.43  0.04360       25.0%     14.82

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1384-1441   KEECFGLLGLNGAGKTTTFKILTGEEIATSGDVFIEGYSITRNILKVRSKVGYCPQFD

   WD40 Template    TGECLRTLSGHTSG-------------VTSVSFSPDGKRLVSG-----SEDGTIKVWD