WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000081611 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000081611 (Len=3037) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000081611, Len=3037): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVSDGMTGSNPVSPASSSSPDSSGAGGISPQHIAQDSSLDGPPGPQDGTTVPLEGFSLSHAADLVNRGQKWEKSHAEIAE 80
WD40-rpts
Query 81 QAKHEAEIETRIAELRKEGFWSLKRLPKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQ 160
WD40-rpts
Query 161 KEERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQPPASS 240
WD40-rpts
Query 241 KAGSSPCLGSSSAASSPPPPVSRLDDEDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQRREIELLRHEGELPLEELLRS 320
WD40-rpts
Query 321 LPPQLLGGPFSPSQTPSHDSDTQDGPEENIEEEPSQDLEVHPPSSAVTQCNKQRWHPDEDDEEFTANEDEAEDEEDTIAA 400
WD40-rpts
Query 401 EEQLEGEVDHAMELSELAREGELSMEELLQQYAGAYACDASAPASGDSEDEDEVEANSSDGELEETVEEAAQEDSSSQSD 480
WD40-rpts
Query 481 SAEECSEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEEQDDDGFGVEYLLARDDERSEVDGGSGPPTPGPTTTL 560
WD40-rpts
Query 561 GPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLA 640
WD40-rpts
Query 641 HLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRK 720
WD40-rpts
Query 721 NWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGS 800
WD40-rpts
Query 801 QEYNEGLVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQLR 880
WD40-rpts
Query 881 KVCNHPNLFDPRPVTSPFITPGICFSTASLVLRATEVHPLQRIDMGRFDLIGLEGRVSRYEADTFLPRHRLSHRILLEIA 960
WD40-rpts
Query 961 TAPDPPPRPKPVKMKVNRMLQPVPKQEGRTVVVVNSPRPPLGPVPVRPPPGPEVSAQPALGPVPPVLPAPLMVSASPAGT 1040
WD40-rpts
Query 1041 PVVPASRPPGPVLLSPLQPNTGPLPQAGEVVSIGQLASLAQRPVTSAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPL 1120
WD40-rpts
Query 1121 QMPPSMVNNTGVVKIVVRQAPRDGLTPVPPLAPAPRPSSSGLPAVLTSRPTLTPSRLSSPTLGTTRTPIPTPTLVRPLLK 1200
WD40-rpts
Query 1201 LVHSPSPEVSASAPGAAPMTISSSLHMPSSLPGPASSPMTIHNSSPLSSPVSSTVSVPVSSSLPISVPTTLPVPTSAPLP 1280
WD40-rpts
Query 1281 IPITAPLPVSDLGPALLTSVTPALAVVSAASGPPLASAGVSPSMSALALGLATTPALSPPQTSGHSLLLATTSSHVPGLN 1360
WD40-rpts
Query 1361 SAVAPACSPVLVSASALTSPFPVSPSSAPAQASLLAAAPSTSQALATSLAPMAASQTAILGPSPTPPLAPLPVLAASQTP 1440
WD40-rpts
Query 1441 LPAMTPPSMSGTPLPSSSLVSAPTSVLAPSSTQTLVSTPVSSPLSSLASTQTLTLAPTLAPTLGGLSPSQTHSLGTGSPQ 1520
WD40-rpts
Query 1521 GPFPIQTLSLTPASSLVPTPAQTLSLAPGGPVGPTQTLSLAPVPPLPPSSPVGPAPGHTLTLAPAASSASLLVPTSVQTL 1600
WD40-rpts
Query 1601 TLSPAPVPVPTLDLSATQTLALAPALTQAPASQASSLVSASGAASLPVTMVNRLPVPKDEPETLTLRSGPPSPLPTATSF 1680
WD40-rpts
Query 1681 SGPRPRRQPPPPPRSPFYLDSLEEKRKQQRSERLDRIFQLSEAHGALAPVYGTEVLDFCTLPQPVASPIGPRSPGPSHPI 1760
WD40-rpts
Query 1761 FWTYTEAARRAVLFPQQRLEQLSEIIERFIFVMPPVEAPPPSLHACHPPPWLAPHQAAFQEQLACELWPRARPLHRIVCN 1840
WD40-rpts
Query 1841 MRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNA 1920
WD40-rpts (_________________________
Query 1921 DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLG 2000
WD40-rpts WD 1_________________________)
Query 2001 DMAIEGGNFTTAYFKQQTIRELFDMPLEEPPGSSVSSVPEDEEEAVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAE 2080
WD40-rpts
Query 2081 LAEFNENDGFPAGEGEEANRPGPGAEDEEMSRAEQEIAALVEQLTPIERYAMKFLEASLEEVSREELKQAEEQVEAARKD 2160
WD40-rpts
Query 2161 LDQAKEEVFRLPHEEEEGPGAGDEMSCGSSGASHRRSKKIRAPERLGTRVSERLRGARAETQGANHTPVTSSHHTCNTFV 2240
WD40-rpts
Query 2241 PPQCSPVRERIPRPVPRPRPPPPPPASVASAITSALATAPIPISAPNPVTILPVHILPTPPLLQLPPSSSPASTPPSACT 2320
WD40-rpts
Query 2321 PLPTCTPLQAQTSVLTSSSPAPLDSLSVPISPGVTNLPLDSGEVGLCAQELAPVESLELPGMTNSEASLASLVSPKDLLP 2400
WD40-rpts
Query 2401 VAVDILPESEKTLPCIPAPSSTLEAESIPNGQQQEVPGPVEGTNTTLLPGSEELTMSLNESNGLELPPSAASAEPLDELL 2480
WD40-rpts
Query 2481 ETHRNSGETREVQIPISNSEKPQELVRAEVTAPSTSSSATSSPEGPLPARPPRRRTSADVEIRGQGSGRTGQLPGPKVLR 2560
WD40-rpts
Query 2561 KLPGRLVTVVEEKELVKRRRHRAPASTLVPGVSEVSASPRSPSIHSMSGPESSPPSSGPCEAAPTSSLSTPTQSTFIACR 2640
WD40-rpts
Query 2641 HNELGTTTGGSPENGEGTELAITPPAVKRRRGRPPKKNRSPADAGRGVDEVPSSISKGKTNGVDPVPGPETVTVAEPDLR 2720
WD40-rpts
Query 2721 PQFVPGPQPPGPQPVHRPEPTILSPVEKRRRGRPPKARDLPIPGTISSPGGGNLESRTQSLPFPAPLTPLLACPTAVTNT 2800
WD40-rpts
Query 2801 VTTVTISTSPPKRKRGRPPKNPPSPRPSQHPVLDPDSSSILESCGLGVQRQPLGQAESEGSSSDEDGSRPLTRLARLRLE 2880
WD40-rpts
Query 2881 AEGMRGRKSEGSMVMAVIQDDLDLADSGPSGLELTPPVVSLTPKFRSTRLRPGSLVPPLETEKMPRKRSGAPVGSSGMAK 2960
WD40-rpts
Query 2961 RGRLQPPSPLGPEGSVEESEVEASGDEEEGDGTPRRRTGPRRLVGTTNQGDQRILRSSAPPHLCIPTISHRGRKAKT 3037
WD40-rpts
 1 WD40-repeats found in QUERY=ENSMUSP00000081611 (Len=3037): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 18 1895-1950 3.01 239.07 0.03673 22.5% 33.20Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1895-1950 HGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGAD-TVVFYD WD40 Template TGECLRTLSGHTS-----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |