Input parameters:

  Query = ENSMUSP00000081572 (Len=521)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000081572, Len=521):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASSRASSTTTKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEEHISE 80  
WD40-rpts                                                                                      

Query       81 RQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEE 160 
WD40-rpts                                                                                      

Query      161 YQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSP 240 
WD40-rpts                                                                 (_________________WD 

Query      241 NSKMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEG 320 
WD40-rpts      1________________)   (_____________________WD 2____________________)   (________

Query      321 HTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIM 400 
WD40-rpts      _________WD 3________________)   (_________________WD 4________________)   (____

Query      401 FLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPG 480 
WD40-rpts      _____________WD 5________________)   (_________________WD 6_________________)   

Query      481 WSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 521 
WD40-rpts      (_________________WD 7________________)  

7 WD40-repeats found in QUERY=ENSMUSP00000081572 (Len=521):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   220-258      8.11  449.70  5.4e-05       22.5%     50.30
  WD 2:  Seg  7   262-308      7.99  444.79  6.3e-05       35.0%     53.02
  WD 3:  Seg 11   312-350      9.37  501.69  1.1e-05       30.0%     54.75
  WD 4:  Seg 15   354-392      9.39  502.62  1.0e-05       32.5%     52.58
  WD 5:  Seg 19   396-434     10.74  558.40  1.9e-06       42.5%     55.26
  WD 6:  Seg 23   438-477      8.67  472.98  2.6e-05       37.5%     54.67
  WD 7:  Seg 27   481-519      9.55  509.00  8.6e-06       35.0%     54.47

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  220-258    LNNFCSQIGDDRPISYCHFSP-NSK--------MLATACWSGLCKLWS
   WD 2  262-308    CSLLHTLRGHNTNVGAIVFHP-KSTVSLDQKDVNLASCAADGSVKLWS
   WD 3  312-350    DEPVADIEGHTVRVARVMWHP-SGR--------FLGTTCYDRSWRLWD
   WD 4  354-392    QEEILHQEGHSMGVYDIAFHQ-DGS--------LAGTGGLDAFGRVWD
   WD 5  396-434    GRCIMFLEGHLKEIYGINFSP-NGY--------HIATGSGDNTCKVWD
   WD 6  438-477    RRCVYTIPAHQNLVTGVKFEPIHGD--------FLLTGAYDNTAKIWT
   WD 7  481-519    WSPLKTLAGHEGKVMGLDISS-DGQ--------LIATCSYDRTFKLWM

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-DGK--------RLVSGSEDGTIKVWD