Input parameters:

  Query = ENSMUSP00000080936 (Len=184)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000080936, Len=184):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMR 80  
WD40-rpts                                               (_________________________________WD 1_

Query       81 AIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAH 160 
WD40-rpts      _______________________________)  (______________WD 2_____________)   (_________

Query      161 DSPVRAMTWSHNDMWMLTADHGGY 184 
WD40-rpts      _____WD 3______________)

3 WD40-repeats found in QUERY=ENSMUSP00000080936 (Len=184):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    42-112      3.39  254.73  0.02275       15.0%     14.84
  WD 2:  Seg  3   115-147      6.90  399.55  0.00026       27.5%     44.30
  WD 3:  Seg  5   151-184      3.63  264.58  0.01681       15.0%     45.51

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   42-112    TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVR
   WD 2  115-147    TN--------------------------------------KVKCPVFVVRWTPEGRRLVTGASSGEFTLWN
   WD 3  151-184    -FNFET-------------------------------ILQAHDSPVRAMTWSHNDMWMLTADHGGY-----

   WD40 Template    TGECLR-------------------------------TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD