Input parameters:

  Query = ENSMUSP00000080930 (Len=555)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000080930, Len=555):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 AELRAARAGWQLEWVRELPPPPPPPPPPPPGPIAAERRERGGAAGAAMEPDSVIEDKTIELMISNGTSSVIVSRKRPSEG 80  
WD40-rpts                                                                                      

Query       81 NYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAA 160 
WD40-rpts                                                                                      

Query      161 ELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGR 240 
WD40-rpts                                                                                (_____

Query      241 HNLQRIQCRSENSKGVYCLQYDDDKIISGLRDNSIKIWDKSSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDV 320 
WD40-rpts      _______________WD 1___________________)   (________________WD 2_______________) 

Query      321 NTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 400 
WD40-rpts        (________________WD 3_______________)(___________________WD 4_________________

Query      401 WSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 480 
WD40-rpts      _)   (________________WD 5_______________)   (________________WD 6______________

Query      481 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR 555 
WD40-rpts      _)            (________________WD 7_______________)                        

7 WD40-repeats found in QUERY=ENSMUSP00000080930 (Len=555):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   235-279      6.63  388.70  0.00036       30.0%     48.69
  WD 2:  Seg  6   283-319      8.92  482.97  1.9e-05       42.5%     49.46
  WD 3:  Seg 10   323-359      8.01  445.56  6.1e-05       40.0%     51.71
  WD 4:  Seg 14   360-402      7.70  432.72  9.2e-05       45.0%     44.93
  WD 5:  Seg 17   406-442      8.60  470.03  2.9e-05       40.0%     50.54
  WD 6:  Seg 21   446-482      9.06  488.71  1.6e-05       55.0%     53.45
  WD 7:  Seg 24   495-531      6.92  400.47  0.00025       40.0%     47.66

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  235-279    NWR-----CGRHNLQRIQCRSENSKGVYCLQY--DDDKIISGLRDNSIKIWD
   WD 2  283-319    -LE-----C-------LKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWD
   WD 3  323-359    -GE-----V-------LNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWD
   WD 4  360-402    MASATDITL-------RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWS
   WD 5  406-442    -CE-----F-------VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWD
   WD 6  446-482    -GA-----C-------LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD
   WD 7  495-531    -TL-----C-------LRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD

   WD40 Template    TGE-----C-------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD