Input parameters:

  Query = ENSMUSP00000079974 (Len=748)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000079974, Len=748):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEAVERTDELVREYLLFRGFTHTLRQLDAEIKADKEKGFRVDKIVDQLQQLMQVYDLAALRDYWSYLERRLFSRLEDIY 80  
WD40-rpts                                                                                      

Query       81 RPTINKLKTSLFRFYLVYTIQTNRNDKAQEFFAKQATELQNQAEWKDWFVLPFLPSPDTNPTFATYFSRQWADTFIISLH 160 
WD40-rpts                                                                                      

Query      161 NFLSVLFQCMPVPVILNFDAECQRTNQVQEENEVLRQKLFALQAEIHRLKKEEQQQEEEAAALVQHKLPPYVSSMDRLGD 240 
WD40-rpts                                                                                      

Query      241 SELALVCSQRPASLSQSPRVGFLSSLLPQSKKSPSRLSPAQGPPQAQSSAKKDSFSSQATKGKDSVPGAKDGKSLLSGPV 320 
WD40-rpts                                                       (_________________WD 1_________

Query      321 PGEASWTHQRQRRLQDHGKERRELLSTSSSQSQCAERKPEVSGAEAEPCLELHMGPVEVLARVSTAGSEGDRPEQPFIVL 400 
WD40-rpts      _______)                                                          (_____________

Query      401 SQEEYGEHHSSIMHCRVDCSGRRVASLDVDGVIKVWSFNPIMQTKASSISKSPLLSLEWATKRDRLLLLGSGVGTVRLYD 480 
WD40-rpts      __________WD 2______________________)   (_________________WD 3_________________)

Query      481 TEAKKNLCEININDDMPRILSLACSPNGASFVCSAAAPSLTSQTDSSAPDIGSKGMNQVPGKLLLWDTKTMKQQLQFSLD 560 
WD40-rpts           (_________________WD 4________________)                             (______

Query      561 PEPIAINCTAFNHNGNLLVTGAADGVIRLFDMQQHECAMSWKAHCGEVYSVEFSCDENAVYSIGEDRKFIQWNIHKSGLK 640 
WD40-rpts      __________WD 5________________)   (_________________WD 6________________)       

Query      641 VSESNLPSDATGPFVLSGYSGYKQVQVPRGRLFAFDSEGNYMLTCSATGGLIYKLGSEEKVLENCLSLGGHRAPVVTVDW 720 
WD40-rpts                       (________________WD 7________________)      (__________________

Query      721 STAMDCGTCLTASMDGKIKLTTLLAHKL 748 
WD40-rpts      WD 8_________________)      

8 WD40-repeats found in QUERY=ENSMUSP00000079974 (Len=748):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   290-328      2.90  234.40  0.04233       30.0%     -2.86
  WD 2:  Seg  3   387-437      8.27  456.14  4.4e-05       32.5%     42.78
  WD 3:  Seg  6   441-480      7.10  408.03  0.00020       22.5%     50.59
  WD 4:  Seg 10   486-524      7.28  415.56  0.00016       15.0%     44.18
  WD 5:  Seg 14   554-591      8.70  473.92  2.5e-05       25.0%     46.79
  WD 6:  Seg 17   595-633      9.00  486.55  1.7e-05       32.5%     54.32
  WD 7:  Seg 23   658-695      5.50  341.81  0.00154       10.0%     44.06
  WD 8:  Seg 27   702-742      7.26  414.64  0.00016       32.5%     47.12

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  290-328    -AKKDSF-----------SSQATKGKDSVPGAK--D-GKSLLSGPVPGEASWTH
   WD 2  387-437    GSEGDRPEQPFIVLSQEEYGEHHSSIMHCRVDC--S-GRRVASLDVDGVIKVWS
   WD 3  441-480    -IMQTKA-----------SSISKSPLLSLEWAT--KRDRLLLLGSGVGTVRLYD
   WD 4  486-524    -NLCEIN-----------INDDMPRILSLACSP--N-GASFVCSAAAPSLTSQT
   WD 5  554-591    --QLQFS-----------LDPEPIAINCTAFNH--N-GNLLVTGAADGVIRLFD
   WD 6  595-633    -HECAMS-----------WKAHCGEVYSVEFSC--D-ENAVYSIGEDRKFIQWN
   WD 7  658-695    GYS--GY-----------KQVQVPRGRLFAFDS--E-GNYMLTCSATGGLIYKL
   WD 8  702-742    -LENCLS-----------LGGHRAPVVTVDWSTAMD-CGTCLTASMDGKIKLTT

   WD40 Template    TGECLRT-----------LSGHTSGVTSVSFSP--D-GKRLVSGSEDGTIKVWD