Input parameters:

  Query = ENSMUSP00000078544 (Len=1704)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000078544, Len=1704):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAVLRQLTLLLWKNYTLKKRKVLVTVLELFLPLLFSGILIWLRLKIQSENVPNATVYPDQSIQELPLFFSFPPPGGTWEL 80  
WD40-rpts                                                                                      

Query       81 AYVPSHSDAARTITETVKREFMIKMRVHGFSSEKDFEDYIRYDNHSSSVLAAVVFEHSFNHSQDPLPLAVKYHLRFSYTR 160 
WD40-rpts                                                                                      

Query      161 RNYMWTQTGNIFLKETEGWHTTSLFPLFPSPGPREPSSPDGGEPGYIREGFLAMQHAVDKAIMRYHANTSAQQLFQKLMV 240 
WD40-rpts                                                                                      

Query      241 ITKRFPFPPYISDPFLIAIQYQLPLLLMLSFTYTSLTIIRAVVQEKEKKLKEYMRMMGLNSWLHWSAWFLMFFLFFLIVV 320 
WD40-rpts                                                                                      

Query      321 SFMTLLFCVKVKKDIAVLSNSDPSLVLAFLLCFAISSISFSFMVSTFFSKANIAAAVGGFLYFFTYTPYFFVAPRYNWMT 400 
WD40-rpts                                                                                      

Query      401 LSQKLLSCLLSNVAMAMGAQLIGKFEAKGTGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGLVTWYVEAVFPGQFGV 480 
WD40-rpts                                                                                      

Query      481 PQPWHFFLMPSYWCGNPRTVVGKEEEGSDPEKALRNEYFEAEPEDLVAGIKIKHLSKVFQVGNKDKMGIRDLTLNLYEGQ 560 
WD40-rpts                                                                                      

Query      561 ITVLLGHNGAGKTTTMSLLTGLFPPTSGHAYIHGYEISQDMAQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLKGLSLQK 640 
WD40-rpts                                                                                      

Query      641 CPEEVKQMLHILSLEDKRDLRSKFLSGGMKRKLSIGIALIAGSKVLMLDEPTSGMDAVSRRAIWDLLQQQKSDRTVLLTT 720 
WD40-rpts                                                                                      

Query      721 HFMDEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHMTLVKEPHCNPEGISQLVHHHVPNAMLESHAGAELSFILPK 800 
WD40-rpts                                                                                      

Query      801 ESTHRFESLFAKLEKKQKELGIASFGASVTTMEEVFLRVGKLVDTSMDIQAIQLPALQYQHERRASDWALDSNLCGVMDP 880 
WD40-rpts                                                                                      

Query      881 TNGIGALIEEEEVLVKLNTGLALHCQQFWAMFLKKAAYSWREWKMVAAQVLVPLTCLTLALLAIHYTSEIFDDPLLKLSL 960 
WD40-rpts                                                                                      

Query      961 NEYGRTVVPFSVPGTSRLAQQLSENLRDMLQAERQEPREVLGDLEEFLVFRASVEGGGFNERCLVATSFKDRGELTVVTA 1040
WD40-rpts                                                                                      

Query     1041 LFNNQAYHSPATALAIVDNLLFKLLCGPQASIEISNYPQPRNTLQVAKDHFNEGRKGFDIALNLLIAMAFLASTFSILAV 1120
WD40-rpts                                                                                      

Query     1121 SERAVQAKHVQFVSGVHVATFWFSALLWDLISFLVPSLLLLVVFQAFNVHAFTRDGHMADLLLLLMLYGWAIIPLMYLMS 1200
WD40-rpts                                                                                      

Query     1201 FFFSAASTAYTRLTIFNILSGIATFIMVTIMRIPAVKLEELSRTLDHVFLVLPNHCLGMAVSNFYENYETRRYCTSSELA 1280
WD40-rpts                                                                                      

Query     1281 AHYCKKYNIQYQESFYAWSTPGVGKFVTSMAASGGIYLTLLFLIETNLLWRLRTFICAFRRRWTLAELQNRTSVLPEDQD 1360
WD40-rpts                                                                                      

Query     1361 VAEERSRILVPSLDSMLDTPLIINELSKVYDQRAPLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDA 1440
WD40-rpts                                                     (__________________________WD 1__

Query     1441 FVGGYSISSDIGKVRQRMGYCPQFDALLDHMTGREMLVMYARLRGIPERLINACVENTLRGLLLEPHANKLVKTYSGGNK 1520
WD40-rpts      ________________________)                                                       

Query     1521 RKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQH 1600
WD40-rpts                                                                                      

Query     1601 LKSKFGSGYSLQAKVRSEGKQDALEEFKAFVDLTFPGSILEDEHQDMVHYHLPGCDLSWAKVFGILEKAKEKYGVDDYSV 1680
WD40-rpts                                                                                      

Query     1681 SQISLEQVFLSFAHLQPPTTEDGR 1704
WD40-rpts                              

1 WD40-repeats found in QUERY=ENSMUSP00000078544 (Len=1704):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 25  1408-1465     3.00  238.58  0.03728       27.5%     15.68

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1408-1465   KGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISSDIGKVRQRMGYCPQFD

   WD40 Template    TGECLRTLSGHTSG-------------VTSVSFSPDGKRLVSG-----SEDGTIKVWD