Input parameters:

  Query = ENSMUSP00000078503 (Len=468)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000078503, Len=468):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEVHLPRLPLMKIFSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLFCDMVTLQLLGTETWKQFFVFRTWQEHAK 80  
WD40-rpts                                                                                   (__

Query       81 TRAKPEDFTYKEIPAEYGFRANACYISGCGLTRNVQDRSVICMVSSMTKLSTWDIREGIMTWVSTEQPAYIKLLTTLPEM 160 
WD40-rpts      ________________________WD 1_________________________)   (_________________WD 2_

Query      161 HIAVTVDTHSTIKLWDCHNREALATNCLFSSCKLLKAVFSKDDPIVLVGDISGNLYIFRIPDLHLISKVNVFPYGIDELH 240 
WD40-rpts      _______________)   (_________________WD 3_________________)   (_________________

Query      241 CSPQKKWVFLIMKHPRVLTKVVYMNSLLRTSEFSAPVSTILKFSLCDKAFWTPRREDRITQMSRGVPPRPTKFATFDMKL 320 
WD40-rpts      WD 4________________)   (_________________WD 5________________)                 

Query      321 EEIGNKVTVQEYLVASFSLQDYEASPEWMGVSNKDVIVCSTGSSLLLFNIHGLRLQTFHYCPEEILRLWVDPLHVIVTCN 400 
WD40-rpts                (_________________WD 6________________)  (_________________WD 7_______

Query      401 DGSMDVYAWEERSLLLRKCYRLQNRRNLPPESFIFKTLCDDVSIIGVMTNSPAPCFLMAYTLASALEN 468 
WD40-rpts      _________)                                                          

7 WD40-repeats found in QUERY=ENSMUSP00000078503 (Len=468):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    78-134      3.61  263.62  0.01731       17.5%     28.05
  WD 2:  Seg  4   138-176      8.04  446.72  5.9e-05       20.0%     54.87
  WD 3:  Seg  8   180-219      6.79  395.04  0.00030       22.5%     54.83
  WD 4:  Seg 12   223-261      7.36  418.68  0.00014       10.0%     54.62
  WD 5:  Seg 16   265-303      3.45  257.14  0.02113       20.0%     29.06
  WD 6:  Seg 22   331-369      6.07  365.28  0.00074        7.5%     36.85
  WD 7:  Seg 26   372-410      6.38  378.24  0.00050       12.5%     36.55

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   78-134    HAKTRAKPEDFTYKEIPAEYGFRANACYIS-GCGLTRNVQDRSVICMVSSMTKLSTWD
   WD 2  138-176    -GIM-----------------TWVSTEQPA-YIKLLTTLPEMHIAVTVDTHSTIKLWD
   WD 3  180-219    -REA-----------------LATNCLFSSCKLLKAVFSKDDPIVLVGDISGNLYIFR
   WD 4  223-261    -LHL-----------------ISKVNVFPY-GIDELHCSPQKKWVFLIMKHPRVLTKV
   WD 5  265-303    -NSL-----------------LRTSEFSAP-VSTILKFSLCDKAFWTPRREDRITQMS
   WD 6  331-369    -EYL-----------------VASFSLQDY-EASPEWMGVSNKDVIVCSTGSSLLLFN
   WD 7  372-410    -GLR-----------------LQTFHYCPE-EILRLWVDPLHVIVTCNDGSMDVYAWE

   WD40 Template    TGEC-----------------LRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD