Input parameters:

  Query = ENSMUSP00000076706 (Len=343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000076706, Len=343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTSVKEQAAISRLLSFLQEWDNAGKGLRNQILTTFIKTNEGKTGPELELEFSQGASLFLIRVTTWLRIIYMTGLELEKIL 80  
WD40-rpts      (_______________________________________________________________________________

Query       81 RSIGIFLSAVSSNRYLLEFLEIGGVLTLLEILGVEKINEEDKKESIKLLQIIANTGRKYKELICESYGVRAIAEFLAKSK 160 
WD40-rpts      _____________________________________________WD 1_______________________________

Query      161 SEETQEEVQVLLETLVHGNPKYQNQVYKGLIALLPCESPKAQRLALQTLKTAQSIVGATHPSIVDRVLTVLSTVHLEVQY 240 
WD40-rpts      ________________________________________________________________________________

Query      241 EAIELIKDLIHYDVRLPLLKGLVALLMPPVKETSKLQAKIFSGRTPPWDCPLEVGKASWLTVPHFFRLFDSPDHNPVTRV 320 
WD40-rpts      ____________)                                                                   

Query      321 PAAGCSCQDHWVGLQQEWVIAAS 343 
WD40-rpts                             

1 WD40-repeats found in QUERY=ENSMUSP00000076706 (Len=343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-253      2.82  231.22  0.04662       25.0%     -17.79

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-253    MTSVKEQAAISRLLSFLQEWDNAGKGLRNQILTTFIKTNEGKTGPELELEFSQGASLFLIRVTTWLRIIYMTGLELEKILRSIGIFLSAVSSNRYLLEFLEIGGVLTLLEILGVEKINEEDKKESIKLLQIIANTGRKYKELICESYGVRAIAEFLAKSKSEETQEEVQVLLETLVHGNPKYQNQVYKGLIALLPCESPKAQRLALQTLKTAQSIVGATHPSIVDRVLTVLSTVHLEVQYEAIELIKDLIHYD

   WD40 Template    TGE-------------------CL-----------------RTL----------S-----------------GH---------------TS---------------------GVTSVS---------------------------------------FSPD----------------GK---------------RLVS-------------------GSEDG----------TIKV---------------WD