Input parameters:

  Query = ENSMUSP00000076160 (Len=733)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000076160, Len=733):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAASAATLVSGGVAPAAGSGGLGGPGRPVLVAAAVSGSASA 80  
WD40-rpts                                                                                      

Query       81 GGAVSAGQSRLSCAARPSAGVGGSSSSLGSSSRKRPLLVPLCNGLLNSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYK 160 
WD40-rpts                                                                                      

Query      161 CIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDLLGTDQDNLDLANV 240 
WD40-rpts                                                                                      

Query      241 NLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAP 320 
WD40-rpts                                                                   (__________________

Query      321 SPSHSSIIDSTEYSQPPGFSGTSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSK 400 
WD40-rpts      ____WD 1______________________)     (________________________WD 2_______________

Query      401 FTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISW 480 
WD40-rpts      ________)       (_______________WD 3______________)     (____________________WD 

Query      481 SSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANV 560 
WD40-rpts      4___________________)   (_________________WD 5_________________)   (____________

Query      561 CCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKG 640 
WD40-rpts      _____WD 6________________)    (________________WD 7________________)(___________

Query      641 HINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESNVLIA 720 
WD40-rpts      _______WD 8__________________)   (__________________________WD 9________________

Query      721 ANSQGTIKVLELV 733 
WD40-rpts      __________)  

9 WD40-repeats found in QUERY=ENSMUSP00000076160 (Len=733):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   302-351      3.45  257.34  0.02100       20.0%     24.53
  WD 2:  Seg  4   357-409      4.90  316.91  0.00333       17.5%     27.73
  WD 3:  Seg  6   417-451      6.64  389.12  0.00035       22.5%     49.90
  WD 4:  Seg  9   457-501      6.17  369.35  0.00066       25.0%     43.79
  WD 5:  Seg 12   505-544      8.09  449.04  5.5e-05       35.0%     54.37
  WD 6:  Seg 16   548-586      5.81  354.53  0.00104       22.5%     54.04
  WD 7:  Seg 20   591-628      7.28  415.33  0.00016       27.5%     53.51
  WD 8:  Seg 24   629-670      8.28  456.54  4.4e-05       27.5%     55.72
  WD 9:  Seg 28   674-731      3.86  274.27  0.01247       27.5%     56.39

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  302-351    SGLYSPVSEDSTVPQ--FEAPSPSHS---------------SIIDSTEYS-Q----PPG---FSGTSQTKK---------------QPWY
   WD 2  357-409    --------------S--RRKRLTAHF---------------EDLEQCYFS-T----RMS-RISDDSRTASQLDEFQECLSKFTRYNSVRP
   WD 3  417-451    -------------------SDLYNGS---------------SIVSSIEFD-R----DCD-YFAIAGVTKKI---------------KVYE
   WD 4  457-501    QD--------AVDIH--YPENEMTCN---------------SKISCISWS-S----YHKNLLASSDYEGTV---------------ILWD
   WD 5  505-544    -G------------Q--RSKVYQEHE---------------KRCWSVDFNLM----DPK-LLASGSDDAKV---------------KLWS
   WD 6  548-586    -D------------N--SVASIEAKA---------------N-VCCVKFS-P----SSRYHLAFGCADHCV---------------HYYD
   WD 7  591-628    -K------------Q--PIMVFKGHR---------------KAVSYAKFV------SGE-EIVSASTDSQL---------------KLWN
   WD 8  629-670    VG------------KPYCLRSFKGHI---------------NEKNFVGLA-S----NGD-YIACGSENNSL---------------YLYY
   WD 9  674-731    -S------------K--TLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWR-ALSDGESN-VLIAANSQGTI---------------KVLE

   WD40 Template    TG------------E--CLRTLSGHT---------------SGVTSVSFS-P----DGK-RLVSGSEDGTI---------------KVWD