Input parameters:

  Query = ENSMUSP00000076155 (Len=395)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000076155, Len=395):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCDQTFLVNVFGSCDKCFKQRALRPVFKKSQQLNYCSTCAEIMATDGLHENETLASLKSEAESLKGKLEEERAKLHDVEL 80  
WD40-rpts                                            (_________________WD 1________________)   

Query       81 HQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 160 
WD40-rpts                    (_________________WD 2________________)   (_________________WD 3__

Query      161 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 240 
WD40-rpts      ______________)         (_________________WD 4________________)   (_____________

Query      241 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 320 
WD40-rpts      _____WD 5_________________)   (_________________WD 6________________)   (_______

Query      321 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 395 
WD40-rpts      ___________WD 7_________________)   (_________________WD 8________________)

8 WD40-repeats found in QUERY=ENSMUSP00000076155 (Len=395):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    39-77       5.69  349.67  0.00121       15.0%     28.51
  WD 2:  Seg  4    95-133     10.13  533.03  4.1e-06       40.0%     52.01
  WD 3:  Seg  8   137-175      8.50  465.63  3.3e-05       15.0%     55.76
  WD 4:  Seg 12   185-223      8.97  485.17  1.8e-05       25.0%     54.32
  WD 5:  Seg 16   227-267      8.69  473.43  2.6e-05       35.0%     55.64
  WD 6:  Seg 20   271-309     10.28  539.26  3.4e-06       37.5%     51.90
  WD 7:  Seg 24   313-353      8.04  446.72  5.9e-05       37.5%     57.64
  WD 8:  Seg 28   357-395      9.83  520.69  6.0e-06       40.0%     50.51

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-77     CAEIMATDGLH--ENETLASLKSE--A---ESLKGKLEEERAKLHD
   WD 2   95-133    MKTRRTLKGHG--NKVLCMDWCKD--KRRI---VSSSQDGKVIVWD
   WD 3  137-175    TNKEHAVTMPC--TWVMACAYAPS--GCAI---ACGGLDNKCSVYP
   WD 4  185-223    AAKKKSVAMHT--NYLSACSFTNS--DMQI---LTASGDGTCALWD
   WD 5  227-267    GQLLQSFHGHG--ADVLCLDLAPSETGNTF---VSGGCDKKAMVWD
   WD 6  271-309    GQCVQAFETHE--SDVNSVRYYPS--GDAF---ASGSDDATCRLYD
   WD 7  313-353    DREVAIYSKESIIFGASSVDFSLS--GRLL---FAGYNDYTINVWD
   WD 8  357-395    GSRVSILFGHE--NRVSTLRVSPD--GTAF---CSGSWDHTLRVWA

   WD40 Template    GECLRTLSGHT--SGVTSVSFSPD--GKRL---VSGSEDGTIKVWD