Input parameters:

  Query = ENSMUSP00000074387 (Len=417)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000074387, Len=417):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRRRGVELYRAPFPLYALRIDPKTGLLIAAGGGGAAKTGIKNGVHFLQLELINGCLSASLLHSHDTETRATMNLALAGD 80  
WD40-rpts      (__________________WD 1_________________)           (__________________WD 2_____

Query       81 ILAAGQDAQCQLLRFQVHQQKGSKAEKSGSKEQGPRQRKGAPPAEKKSGAQVHPEGVELKVKNLEAVQTDFSNEPLQKVV 160 
WD40-rpts      _____________)   (_________________WD 3________________)       (________________

Query      161 CFNHDNTLLATGGTDGHVRVWKVPSLEKVLEFKAHEGEIGDLTLGPDGKLVTVGWDFKASVWQKDQLVTQLQWQENGPAS 240 
WD40-rpts      _WD 4________________)   (________________WD 5________________)            (____

Query      241 SNTPYRYQACRFGQVPDQLGGLRLFTVQIPHKRLRQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGLGTV 320 
WD40-rpts      ___________________WD 6______________________)   (_________________WD 7_________

Query      321 TGSVAIYIAFSLQRLYYVKEAHGIVVTDVTFLPEKGCGPKLLGPHETALFSVAVDSRCQLHLLPSRRSVPVWLLLLLCVG 400 
WD40-rpts      _______)    (______________________WD 8______________________)                  

Query      401 LIIVTILLLQTAFPGFL 417 
WD40-rpts                       

8 WD40-repeats found in QUERY=ENSMUSP00000074387 (Len=417):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-41       7.40  420.38  0.00013       12.5%     42.18
  WD 2:  Seg  5    53-94       3.76  269.83  0.01430       20.0%     52.46
  WD 3:  Seg  8    98-136      5.99  362.26  0.00082        2.5%     16.33
  WD 4:  Seg 12   144-182      9.27  497.39  1.2e-05       27.5%     55.00
  WD 5:  Seg 16   186-223      7.18  411.45  0.00018       25.0%     51.11
  WD 6:  Seg 21   236-286      3.05  240.58  0.03508       17.5%     26.78
  WD 7:  Seg 24   290-328      8.65  471.82  2.7e-05       25.0%     58.96
  WD 8:  Seg 28   333-382      5.57  344.73  0.00141       22.5%     55.29

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-41     MGRRR--GV---ELYRAPFPLYALRIDPKTG-----------LLIAAG---------GGGAAKTGI
   WD 2   53-94     INGCL--SASLLHSHDTE-TRATMNLALAGD-----------ILAAGQ----------DAQCQLLR
   WD 3   98-136    -HQQK--GS---KAEKSG-SKEQGPRQRKGA-----------PPAEKK---------SGAQVHPEG
   WD 4  144-182    -LEAV--QT---DFSNEP-LQKVVCFNHDNT-----------LLATGG---------TDGHVRVWK
   WD 5  186-223    -LEKV--LE---FKAHEG-EIGDLTLGPDGK-----------LVTVGW----------DFKASVWQ
   WD 6  236-286    NGPASSNTP---YRYQAC-RFGQVPDQLGGL-----------RLFTVQIPHKRLRQPPPCYLTAWD
   WD 7  290-328    -FLPL--RT---RSCGHE-VISCLSVSDSGT-----------FLGLGT---------VTGSVAIYI
   WD 8  333-382    -QRLY--YV---KEAHGI-VVTDVTFLPEKGCGPKLLGPHETALFSVA---------VDSRCQLHL

   WD40 Template    TGECL--RT---LSGHTS-GVTSVSFSPDGK-----------RLVSGS---------EDGTIKVWD