Input parameters:

  Query = ENSMUSP00000073778 (Len=591)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000073778, Len=591):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNKRPNTTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTSTESRGTDTESSGEEKDSD 80  
WD40-rpts       (_________________WD 1_________________)                                       

Query       81 SMEDTGHYSINDESRGHGHSDEEDEEQPRHRGQRKRASRDQDSSDDERALEDWVSSETTALPRPRWQALPALRERELGSS 160 
WD40-rpts                                                                (_________________WD 2

Query      161 ARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLP 240 
WD40-rpts      ________________)_________________WD 3________________)    (__________________WD

Query      241 NSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTK 320 
WD40-rpts       4_________________)      (_________________WD 5_________________)(_____________

Query      321 EKEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASY 400 
WD40-rpts      ________WD 6_____________________)               (_________________WD 7_________

Query      401 NDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 480 
WD40-rpts      ________)      (__________________WD 8__________________)   (_________________WD

Query      481 HPHLPVLATSGLDHDVKIWAPTAEASTELTGLKEVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLRQRRHHRRWREPGV 560 
WD40-rpts       9_________________)  (_________________WD10________________) (_________________

Query      561 GATDADSDESPSSSDTSDEEEGPDRVQCMPS 591 
WD40-rpts      WD11________________)          

11 WD40-repeats found in QUERY=ENSMUSP00000073778 (Len=591):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       6.73  392.47  0.00032       12.5%     -12.18
  WD 2:  Seg  3   139-177      4.22  289.13  0.00788        2.5%     36.66
  WD 3:  Seg  5   177-215      9.19  494.29  1.4e-05       37.5%     52.56
  WD 4:  Seg  9   220-260      7.16  410.39  0.00018       30.0%     52.26
  WD 5:  Seg 13   267-306      6.78  394.61  0.00030       17.5%     53.80
  WD 6:  Seg 17   307-354      5.98  361.48  0.00084       12.5%     52.09
  WD 7:  Seg 22   370-409      8.56  468.06  3.1e-05       20.0%     46.94
  WD 8:  Seg 25   416-457      6.80  395.55  0.00029       27.5%     51.64
  WD 9:  Seg 29   461-500      7.18  411.21  0.00018       20.0%     52.41
  WD10:  Seg 33   503-541      7.58  427.88  0.00011       15.0%     47.19
  WD11:  Seg 36   543-581      6.59  386.85  0.00038       17.5%     24.70

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     SNK-------RPNTTDGRTDL-ANGSL---SSS-PE--E-MSGAEEGRETSSGIE
   WD 2  139-177    -TA-------LPRPRWQALPA-LRERE---LGS-SA--R-FVYEACGARVFVQRF
   WD 3  177-215    -FR-------LQHGLEGHTGC-VNTLH---FNQ-RG--T-WLASGSDDLKVVVWD
   WD 4  220-260    -QP-------VLDFESGHKSN-VFQAK---FLP-NSGDS-TLAMCARDGQVRVAE
   WD 5  267-306    -CK-------NTKRVAQHKGA-SHKLA---LEP-DS--PCTFLSAGEDAVVFTID
   WD 6  307-354    LRQDRPASKLVVTKEKEKKVG-LYTIY---VNPANT--H-QFAVGGRDQYVRIYD
   WD 7  370-409    FCP-------HHLVNSESKAN-ITCLV---YSH-DG--T-ELLASYNDEDIYLFN
   WD 8  416-457    -AQ-------YIKRYKGHRNN-ATVKGVNFYGP-KS--E-FVVSGSDCGHIFLWE
   WD 9  461-500    -CQ-------IIQFMEGDKGGVVNCLE---PHP-HL--P-VLATSGLDHDVKIWA
   WD10  503-541    -AE-------ASTELTGLKEV-IKKNK---RER-DE--D-SLHHTDLFDSHMLWF
   WD11  543-581    -MH-------HLRQRRHHRRW-REPGV---GAT-DA--D-SDESPSSSDTSDEEE

   WD40 Template    TGE-------CLRTLSGHTSG-VTSVS---FSP-DG--K-RLVSGSEDGTIKVWD