Input parameters:

  Query = ENSMUSP00000073617 (Len=466)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000073617, Len=466):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVK 80  
WD40-rpts                                                                                      

Query       81 SRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDM 160 
WD40-rpts       (________________________WD 1_______________________)   (_________________WD 2_

Query      161 HIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKID 240 
WD40-rpts      _______________)   (_________________WD 3_________________)   (_________________

Query      241 CSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKL 320 
WD40-rpts      WD 4________________)   (_________________WD 5________________)                 

Query      321 EENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCN 400 
WD40-rpts                (_________________WD 6________________)  (_________________WD 7_______

Query      401 DGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS 466 
WD40-rpts      _________)(________________WD 8________________)                  

8 WD40-repeats found in QUERY=ENSMUSP00000073617 (Len=466):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    82-134      5.63  347.18  0.00130       20.0%     41.17
  WD 2:  Seg  7   138-176      8.37  460.33  3.9e-05       20.0%     55.94
  WD 3:  Seg 11   180-219      6.68  390.49  0.00034       20.0%     57.01
  WD 4:  Seg 15   223-261      7.71  433.26  9.0e-05       15.0%     52.90
  WD 5:  Seg 19   265-303      5.45  339.86  0.00164       17.5%     33.05
  WD 6:  Seg 25   331-369      6.24  372.47  0.00059       10.0%     36.07
  WD 7:  Seg 29   372-410      7.44  422.01  0.00013       12.5%     39.56
  WD 8:  Seg 33   411-448      3.19  246.37  0.02939       15.0%     11.62

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   82-134    RAIPEDFTYKEIPLECGVRGYAGYIS-GCALTRNGQGKSVVCMVSSKNKISTWD
   WD 2  138-176    -SV-------------ITWVSPVQPA-SIKLLTTLPDMHIAVTVDIQSTIKLWD
   WD 3  180-219    -RE-------------ALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFR
   WD 4  223-261    -LH-------------LISTVNVFPC-GFDKIDCSPQKKWVLLSQNHPCIYPKV
   WD 5  265-303    -SS-------------LLRTSEFSDP-VSTVLEFSLCKRAFWTPRREDRITLMS
   WD 6  331-369    -GD-------------LVASFSLQDY-NENPKWMGVSDKSVIVCSTGSSLLLFS
   WD 7  372-410    -GL-------------HLQTFQYSPE-MIVRLWVDPVHVIITCNDGSIDVYMWE
   WD 8  411-448    --E-------------RSLLLKMCYR-LQNGRHLPPFGFIKNLLCDDVSIVQLM

   WD40 Template    TGE-------------CLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD