Input parameters:

  Query = ENSMUSP00000072481 (Len=770)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000072481, Len=770):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPQSRHPTPHQAAGQPFKFTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTICAQVIPFLSQEHQQQVAQAVERAKQVTMAELNAIIGQQQLQAQHLSHGHGPPVPLTPHPSGLQPPGIPPLGG 160 
WD40-rpts                                                                                      

Query      161 SASLLALSSALSGQSHLAIKDDKKHHDAERHRDREPGTSNSLLVPDSLRGTDKRRNGPEFSSDIKKRKVDDKDNYDSDGD 240 
WD40-rpts                                                                                      

Query      241 KSDDNLVVDVSNEDPSSPHASPTHSPRENGIDKNRLLKKDASGSPASTASSGSSSSLKSKEVSLHEKANTPVLKSSTPTP 320 
WD40-rpts                                                                                      

Query      321 RSDMPTPGTSATPGLRPGLGKPPAMEPLVNQAAAGLRTPLAVPGPYPAPFGMVPHAGMNGELTSPGAAYAGLHSMSPQMS 400 
WD40-rpts                                                                                      

Query      401 AAAAAAAAAVVAYGRSPMVGFDPPPHMRVPSIPPNLAGIPGGKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT 480 
WD40-rpts                  (____________WD 1___________)                        (______________

Query      481 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 560 
WD40-rpts      ______WD 2____________________)(_____________________WD 3____________________)  

Query      561 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 640 
WD40-rpts         (_________________WD 4________________)   (_________________WD 5_____________

Query      641 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 720 
WD40-rpts      ___)(__________________WD 6_________________)(__________________WD 7____________

Query      721 LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 770 
WD40-rpts      _____)(__________________WD 8_________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000072481 (Len=770):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   413-441      2.84  231.90  0.04568       12.5%      7.47
  WD 2:  Seg  6   466-511      6.13  368.02  0.00068       25.0%     50.04
  WD 3:  Seg 10   512-558      7.62  429.33  0.00010       25.0%     47.55
  WD 4:  Seg 13   564-602      8.67  472.86  2.6e-05       30.0%     55.64
  WD 5:  Seg 17   606-644      9.94  525.13  5.2e-06       35.0%     53.80
  WD 6:  Seg 21   645-685      7.08  407.24  0.00020       25.0%     51.15
  WD 7:  Seg 25   686-726      8.30  457.69  4.2e-05       30.0%     53.97
  WD 8:  Seg 29   727-767      7.69  432.39  9.3e-05       32.5%     53.15

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  413-441    YGR--------------------------SPMVGFDPPPHMRVPSIPPNLAGIPG
   WD 2  466-511    LIG-------PGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWD
   WD 3  512-558    ISHPGNKSPVS-------QLDCL-NRDNYIRSCKLLPDGCTLIVGGEASTLSIWD
   WD 4  564-602    -PR-------I-------KAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWD
   WD 5  606-644    -QT-------L-------VRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWD
   WD 6  645-685    LRE-------G-------RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 7  686-726    VNK------PD-------KYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 8  727-767    TPY------GA-------SIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------C-------LRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD