Input parameters:

  Query = ENSMUSP00000071905 (Len=581)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000071905, Len=581):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTSHRQSSDTFGGILPSTLSSRYLSIVNQLPEEFSSVVSEMMVHLENIFSLAENFFQAIERFSRTPDLLERNKMSIGVGA 80  
WD40-rpts                                                                            (_________

Query       81 EGDSWPCHVSHEAPMGSAQTTENSAKEEDKQVPESAALQHPKFKSTPGPQLPTRRRFLSESDELQDPQPVWDAEPQFCQG 160 
WD40-rpts      ________WD 1________________)                                                   

Query      161 FLIQGLWELFMDSRQKNQQEHGGEDSSQESKDSGLCDFKPEPQPRHRNSLSDSADPFLIKSPSALLDYYQEDVSRPQPET 240 
WD40-rpts                                                                                 (____

Query      241 QESSGRADKFLKPLSWGSEVLESSCNQPSTALWQLERFTVPQALQKVRVLKHQELLLVVAVSSFTRHVFTCSQSGIKVWN 320 
WD40-rpts      _____________WD 2________________)(____________________WD 3____________________)

Query      321 LVNQVAEDRDPESHLKCSVQDNKVYLRTCLLSSNSRTLFAGGYNLPGVIVWDLAAPSLYEKCQLPCEGLSCQALANTKEN 400 
WD40-rpts                  (_________________WD 4_________________)   (_________________WD 5___

Query      401 MALAGFTDGTVRIWDLRTQEIVRNLKGPTNSARNLVVKDDNIWTGGLDACLRCWDLRMAKVSLEHLFQSQIMSLAHSPTE 480 
WD40-rpts      ______________)   (________________WD 6_______________)(__________________WD 7__

Query      481 DWLLLGLANGQHCLFNSRKRDQVLTVDTKDNTILGLKFSPNGKWWASVGMGNFITVHSMPTGAKLFQVPEVGPVRCFDMT 560 
WD40-rpts      _______________)   (_________________WD 8________________)(_________________WD 9

Query      561 ENGRLIITGSRDCASVYHIKY 581 
WD40-rpts      _________________)   

9 WD40-repeats found in QUERY=ENSMUSP00000071905 (Len=581):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    71-109      6.82  396.32  0.00028       10.0%      2.75
  WD 2:  Seg  5   236-274      7.04  405.34  0.00021       12.5%     43.21
  WD 3:  Seg  9   275-320      6.15  368.78  0.00067       20.0%     49.89
  WD 4:  Seg 13   333-372      6.66  389.94  0.00035       15.0%     53.37
  WD 5:  Seg 17   376-415      7.69  432.25  9.3e-05       17.5%     53.20
  WD 6:  Seg 21   419-455      7.84  438.47  7.7e-05       25.0%     50.17
  WD 7:  Seg 25   456-496      7.63  429.90  1.0e-04       17.5%     54.90
  WD 8:  Seg 29   500-538      8.92  483.08  1.9e-05       22.5%     54.77
  WD 9:  Seg 33   539-578      5.95  360.49  0.00086       15.0%     51.66

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-109    -RN-------K-MSIGV-GAEGDSWPCHVSHEAPMG-SAQTTE-NSAKEED
   WD 2  236-274    -PQ-------P-ETQES-SGRADKFLKPLSWGSEVL-ESSCNQ-PSTALWQ
   WD 3  275-320    LERFTVPQALQ-KVRVL-KHQELLLVVAVSSFTRHV-FTCS-Q-SGIKVWN
   WD 4  333-372    -SH-------L-KCSVQ-DNKVYLRTCLLSSNSRTL-FAGGYNLPGVIVWD
   WD 5  376-415    -PS-------L-YEKCQ-LPCEGLSCQALANTKENMALAGFTD-GTVRIWD
   WD 6  419-455    -QE-------I-VRNLK-GPTNSARNLVVKDDN--I-WTGGLD-ACLRCWD
   WD 7  456-496    LRM-------AKVSLEH-LFQSQIMSLAHSPTEDWL-LLGLAN-GQHCLFN
   WD 8  500-538    -RD-------Q-VLTVD-TKDNTILGLKFSPNGKWW-ASVGMG-NFITVHS
   WD 9  539-578    MPT-------G-AKLFQVPEVGPVRCFDMTENGRLI-ITGSRD--CASVYH

   WD40 Template    TGE-------C-LRTLS-GHTSGVTSVSFSPDGKRL-VSGSED-GTIKVWD