Input parameters:

  Query = ENSMUSP00000070927 (Len=1125)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000070927, Len=1125):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAFGDYVWPRATSELILLPVTGLECVGDRLLAGEGPDLLVYNLDLGGHLRMVKRVQNLLGHFLIHGFRVRPEPKGDLDS 80  
WD40-rpts                                                                                      

Query       81 EAMIAVFGSKGLKVVKVSWGQSHLRELWRSGLWNMSDWIWDVRWIEGNVAVALGHNSVVLYDPVIGCMLQDVPCTDRCTL 160 
WD40-rpts                         (___________________WD 1__________________)   (______________

Query      161 SSACLVGDTWKELTIVAGAVSNELLIWYPATALTDNKPVAPDRRVSGHVGVIFSMSYLESKGLLATASEDRSVRLWKVGD 240 
WD40-rpts      _____WD 2__________________)          (_________________WD 3________________)(__

Query      241 LRVPGGRVQNIGHCFGHSARVWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHRGRGIRAIATHERQAWVVTGGDDS 320 
WD40-rpts      ___________________WD 4____________________)  (_________________WD 5____________

Query      321 GIRLWHLAGRGYPGLGVSSLSFKSPSRPGALKAVTLAGSWRVLAVTDVGSLYLYDLEVKSWEQLLEDNRFRSYCLLEAAP 400 
WD40-rpts      _____)                (______________WD 6_____________)      (_________________W

Query      401 GPEGFGLCALANGEGLVKVVPINTPTAAVEQKLFQGKVHSLSWALRGYEELLLLASGPGGVIACLEISAAPTGKAIFVKE 480 
WD40-rpts      D 7_________________)   (__________________WD 8__________________)              

Query      481 RCRYLLPPSKQRWHTCSAFLPPGDFLVCGDRRGSVMLFPVRPCLFKKPGAGSKAITAAEAPGAGSGSGGSESVPTGIGPV 560 
WD40-rpts          (_______________WD 9______________)(_________________WD10_________________)(

Query      561 STLHSLHGKQGVTSVTCHGGYLYSTGRDSSYFQLFVHGGHLQPVLRQKACRGMNWVAGLRMVPDGSMVILGFHANEFVVW 640 
WD40-rpts      _______________WD11_______________)   (___________________WD12__________________

Query      641 SPRSHEKLHIVNCGGGHRSWAFSDTEAAMAFTYLKDGEVMLYRALGGCIRPNVILREGLHGREITCVKRVGTVTLGPEFE 720 
WD40-rpts      )                                     (_________________WD13________________)(__

Query      721 VPNLEHPDSLEPGSEGPGLIDIVITGSEDTTVCVLALPTTTGSAHALTSVCNHISSVRALAVWAVGTPGGPQDTRPGLTA 800 
WD40-rpts      _______________WD14________________)       (_________________WD15_______________

Query      801 QVVSAGGRAEIHCFSVMVTPDASTPSRLACHVMHLSSHRLDEYWDRQRNKHKMIKVDPETRYMSLAICELDNDRPGLGPG 880 
WD40-rpts      _)  (__________________WD16_________________)           (_________________WD17__

Query      881 PLVAAACSDGAVRLFLLQDSGRILHLLAESFHHKRCVLKVHSFTHEAPNQRRRLILCSAATDGSLAFWDLTTAMDKGSTT 960 
WD40-rpts      _______________)  (_______________________WD18______________________)           

Query      961 LELPAHPGLPYQMGTPSMTVQAHSCGVNSLHTLPTPEGHHLVASGSEDGSLHVFTLAVKMPEPEEADGEAELVPQLCVLE 1040
WD40-rpts                   (__________________WD19__________________)                        (

Query     1041 EYSVPCAHAAHVTGVKILSPKLMVSASIDQRLTFWRLGQGEPTFMNSTVYHVPDVADMDCWPVSPEFGHRCALAGQGLEV 1120
WD40-rpts      ________________WD20_______________)                                            

Query     1121 YNWYD 1125
WD40-rpts           

20 WD40-repeats found in QUERY=ENSMUSP00000070927 (Len=1125):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   100-142      4.55  302.81  0.00516       12.5%     41.59
  WD 2:  Seg 11   146-188      5.56  344.37  0.00142       17.5%     51.58
  WD 3:  Seg 15   199-237      8.39  461.15  3.8e-05       27.5%     51.23
  WD 4:  Seg 19   238-284      6.14  368.22  0.00068       27.5%     54.76
  WD 5:  Seg 23   287-326      7.86  439.18  7.5e-05       27.5%     58.95
  WD 6:  Seg 28   343-375      4.38  295.70  0.00643       10.0%     42.32
  WD 7:  Seg 31   382-421      5.51  342.16  0.00152       17.5%     49.34
  WD 8:  Seg 35   425-466      5.82  355.02  0.00102       17.5%     52.33
  WD 9:  Seg 40   485-519      6.60  387.10  0.00038       20.0%     43.57
  WD10:  Seg 43   520-559      8.47  464.36  3.4e-05       20.0%     46.71
  WD11:  Seg 47   560-595      4.84  314.49  0.00359       17.5%     44.42
  WD12:  Seg 51   599-641      6.44  380.75  0.00046       22.5%     55.83
  WD13:  Seg 58   679-717      5.21  329.72  0.00224       15.0%     32.14
  WD14:  Seg 62   718-756      6.60  387.15  0.00038       22.5%     29.71
  WD15:  Seg 64   764-802      6.42  379.99  0.00047       12.5%     26.85
  WD16:  Seg 67   805-845      4.37  295.35  0.00650       12.5%     19.28
  WD17:  Seg 70   857-896      6.82  396.46  0.00028       10.0%     34.89
  WD18:  Seg 73   899-949      6.53  384.28  0.00041       20.0%     36.43
  WD19:  Seg 76   974-1015     5.59  345.72  0.00136       35.0%     47.87
  WD20:  Seg 81  1040-1076     6.16  369.18  0.00066       27.5%     45.58

Multiple sequence alignment of 20 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  100-142    -G---------QSHLRELWRS-GLWNMS-----------D-WIWDVRWIEGNV---A---V-ALG--HNSVVLYD
   WD 2  146-188    -G---------CML------Q-DVPCTD-------RCTLS-SACLVGDTWKEL---T---I-VAGAVSNELLIWY
   WD 3  199-237    -V---------APD------R-RVSGHV-----------G-VIFSMSYLESKG---L---L-ATASEDRSVRLWK
   WD 4  238-284    VGDLRVPGGRVQNI------G-HCFGHS-----------A-RVWQVKLLEN-----Y---L-ISAGEDCVCLVWS
   WD 5  287-326    -G---------EIL------Q-AFRGHR-----------GRGIRAIATHERQA---W---V-VTGGDDSGIRLWH
   WD 6  343-375    ----------------------KSPSRP-----------G-ALKAVTLAGSWR---V---L-AVTD-VGSLYLYD
   WD 7  382-421    -E---------QLL------E-DNRFRS-----------Y-CLLEAAPGPEGF---G---LCALANGEGLVKVVP
   WD 8  425-466    -P---------TAA------V-EQKLFQ-----------G-KVHSLSWALRGY---EELLL-LASGPGGVIACLE
   WD 9  485-519    --------------------L-LPPSKQ-----------R-WHTCSAFLPPGD---F---L-VCGDRRGSVMLFP
   WD10  520-559    VR---------PCL------F-KKPGAG-----------S-KAITAAEAPGAG---S---G-SGGSESVPTGIGP
   WD11  560-595    -------------V------S-TLHSLH-----------G-KQGVTSVTCHGG---Y---L-YSTGRDSSYFQLF
   WD12  599-641    -G---------HLQ------P-VLRQKA-------CRGMN-WVAGLRMVPDGS---M---V-ILGFHANEFVVWS
   WD13  679-717    -V---------MLY------R-ALGGCI-----------R-PNVILREGLHGR---E---I-TCVKRVGTVTLGP
   WD14  718-756    EF---------E-V------P-NLEHPD-----------S-LEPGSEGPGLID---I---V-ITGSEDTTVCVLA
   WD15  764-802    -A---------HAL------T-SVCNHI-----------S-SVRALAVWAVGT---P---G-GPQDTRPGLTAQV
   WD16  805-845    AG---------GRA------EIHCFSVM-----------V-TPDASTPSRLAC---H---V-MHLSSHRLDEYWD
   WD17  857-896    DP---------ETR------Y-MSLAIC-----------E-LDNDRPGLGPGP---L---V-AAACSDGAVRLFL
   WD18  899-949    DS---------GRI------L-HLLAESFHHKRCVLKVHS-FTHEAPNQRRRL---I---L-CSAATDGSLAFWD
   WD19  974-1015   -G---------TPS------M-TVQAHS-----------C-GVNSLHTLPTPEGHHL---V-ASGSEDGSLHVFT
   WD20 1040-1076   -----------EEY------S-VPCAHA-----------A-HVTGVKIL-SPK---L---M-VSASIDQRLTFWR

   WD40 Template    TG---------ECL------R-TLSGHT-----------S-GVTSVSFSPDGK---R---L-VSGSEDGTIKVWD