Input parameters:

  Query = ENSMUSP00000070728 (Len=605)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000070728, Len=605):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPAEAVLQEKALKFMCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRKIIPEKNSLRQTY 80  
WD40-rpts                                                                                      

Query       81 NSCARLCINQETVCLTSTAMKTENCVAKAKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQM 160 
WD40-rpts                                                                                      

Query      161 CHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWR 240 
WD40-rpts                                                                                      

Query      241 GLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGL 320 
WD40-rpts                                                 (____________________WD 1____________

Query      321 RDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCS 400 
WD40-rpts      ________)   (________________WD 2_______________)   (________________WD 3_______

Query      401 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV 480 
WD40-rpts      ________)(___________________WD 4__________________)   (________________WD 5____

Query      481 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFR 560 
WD40-rpts      ___________)   (________________WD 6_______________)                (___________

Query      561 LQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR 605 
WD40-rpts      ___WD 7_____________)                        

7 WD40-repeats found in QUERY=ENSMUSP00000070728 (Len=605):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   284-329      6.05  364.59  0.00076       30.0%     48.29
  WD 2:  Seg  5   333-369      8.78  477.43  2.3e-05       40.0%     51.39
  WD 3:  Seg  9   373-409      7.92  441.73  6.9e-05       37.5%     52.67
  WD 4:  Seg 13   410-452      7.69  432.16  9.3e-05       45.0%     44.10
  WD 5:  Seg 16   456-492      8.55  467.80  3.1e-05       40.0%     50.89
  WD 6:  Seg 20   496-532      8.95  484.25  1.8e-05       55.0%     53.40
  WD 7:  Seg 24   549-581      6.81  395.96  0.00029       37.5%     46.36

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  284-329    SNWRCGRH-----SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWD
   WD 2  333-369    -L-----E-----CKRILTGHTGSVLCL-QY--DERVIITGSSDSTVRVWD
   WD 3  373-409    -G-----E-----MLNTLIHHCEAVLHL-RF--NNGMMVTCSKDRSIAVWD
   WD 4  410-452    MA-----SPTDITLRRVLVGHRAAVNVV-DF--DDKYIVSASGDRTIKVWN
   WD 5  456-492    -C-----E-----FVRTLNGHKRGIACL-QY--RDRLVVSGSSDNTIRLWD
   WD 6  496-532    -G-----A-----CLRVLEGHEELVRCI-RF--DNKRIVSGAYDGKIKVWD
   WD 7  549-581    ---------------RTLVEHSGRVFRL-QF--DEFQIVSSSHDDTILIWD

   WD40 Template    TG-----E-----CLRTLSGHTSGVTSV-SFSPDGKRLVSGSEDGTIKVWD