Input parameters:

  Query = ENSMUSP00000069821 (Len=639)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000069821, Len=639):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAPSGVPPLRVLEELGIGLSPTGEVTEAVTSEGAYYLEQVTITETSEDECEYEEIPDDNFSIPEGEEDLEKAIHIIGEQ 80  
WD40-rpts                                                                                      

Query       81 ARDIHILEQQTILPARNVMQEAIEDFLCNFLIKMGMTRTLDCFQAEWYELIQKKGSDFKGLGNVPDVYSQVMLLETENKN 160 
WD40-rpts                                                                                      

Query      161 LKKELKHFKQAAEKAKEDLLRTQKERDFHRMHHKRIVQEKNKLIADLKGLKLHYASYEPTIRVLHEKHHALLKEKMLTSL 240 
WD40-rpts                                                                                      

Query      241 ERDRAVGKISGLQATLKNIDMGHIQVPVIKGSYESASITRESGDRAGHSCEKENSSEGPTQKSLREAREEVGYKSKLKNE 320 
WD40-rpts                                    (___________________WD 1__________________)       

Query      321 KKDSEFPVDMQPDPNVTSCTENVSAAKFDYKLNNIFRLHELPVSCIVMHPCRDYLISCSEDRLWKMVGLPQGNVLLTGSG 400 
WD40-rpts                              (___________________WD 2___________________)   (________

Query      401 HTDWLSGCCFHPSGSKLATSSGDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWDVNSERCRY 480 
WD40-rpts      _________WD 3________________)   (_________________WD 4________________)   (____

Query      481 TLYGHTDSVNSIEFFPFSNILLTASADKTLSVWDARTGKCEQSLYGHMHSVNDATFTPRGHIIASCDARGVTKLWDFRKL 560 
WD40-rpts      _____________WD 5________________)   (_________________WD 6________________)   (

Query      561 IPIVSIDVGPSSGNEVNFDQSGRVLAQASANGIIHLLDLKSGQIHKLVGHESEVHSVVFSHLGENLYSGGSDGTIRLWI 639 
WD40-rpts      _________________WD 7________________)  (_________________WD 8________________)

8 WD40-repeats found in QUERY=ENSMUSP00000069821 (Len=639):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   271-313      4.05  281.90  0.00985       10.0%     -0.37
  WD 2:  Seg  8   345-388      7.77  435.72  8.3e-05       22.5%     47.15
  WD 3:  Seg 12   392-430     10.46  546.61  2.7e-06       45.0%     56.55
  WD 4:  Seg 16   434-472     10.08  531.11  4.3e-06       42.5%     55.59
  WD 5:  Seg 20   476-514     10.24  537.76  3.5e-06       42.5%     54.07
  WD 6:  Seg 24   518-556      9.88  522.89  5.6e-06       35.0%     52.99
  WD 7:  Seg 28   560-598      8.41  462.26  3.7e-05       22.5%     56.38
  WD 8:  Seg 32   601-639      9.26  497.13  1.2e-05       45.0%     48.66

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  271-313    GS------YESASITRESGDRAGHSCEKENSSEGPTQKSLREAREEVGY
   WD 2  345-388    AAKFDYKLNNIFRLHELPVSCIVMHPCRDYLISCSEDRL-----WKMVG
   WD 3  392-430    -G----NVLLTGSGHTDWLSGCCFHPSGSKLATSSGDST-----IKLWD
   WD 4  434-472    -G----ECTLTLEGHNHAVWSCTWHSCGDFVASASLDMT-----SKIWD
   WD 5  476-514    -E----RCRYTLYGHTDSVNSIEFFPFSNILLTASADKT-----LSVWD
   WD 6  518-556    -G----KCEQSLYGHMHSVNDATFTPRGHIIASCDARGV-----TKLWD
   WD 7  560-598    -L----IPIVSIDVGPSSGNEVNFDQSGRVLAQASANGI-----IHLLD
   WD 8  601-639    -S----GQIHKLVGHESEVHSVVFSHLGENLYSGGSDGT-----IRLWI

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-----IKVWD