Input parameters:

  Query = ENSMUSP00000069488 (Len=699)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000069488, Len=699):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDISAPQSRADSRKDRWCPGERCLAPSLDNKKLCEASIKSITVDGNGKPFAVVLYPDFQEKTIPLQRLQEVKSTKDYSRS 80  
WD40-rpts                                                                                      

Query       81 LIFDDKDLEKPYFPDRKIPSLASAFQLSEDGDSIPYTINRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTIQVISF 160 
WD40-rpts                                                                                      

Query      161 LAAVLHKKGTREDIENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGSKKDNELLRLKQR 240 
WD40-rpts                                                                                      

Query      241 KCEIALTTYETLRLCLEELNSLEWSAIIVDEAHRIKNPKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGL 320 
WD40-rpts                                                                                      

Query      321 LGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLPKKEDRMVYCSLTDFQKAVYQT 400 
WD40-rpts                                                                                      

Query      401 VLETEDVALILTSSQPCTCGSGQKRRKCCYKTNSRGDTVRTLCLSYLTVLQKVANHVALLQAASTSKHQETVIKRICDRV 480 
WD40-rpts                                                                                      

Query      481 FSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEE 560 
WD40-rpts                                                                      (_______________

Query      561 RLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMY 640 
WD40-rpts      ___________WD 1_________________________)                                       

Query      641 LRQVYKQQLHCVVVGSENAKRYFEAVQGSKEHRGELFGVHNLFKLRSQGSCLTRDILEV 699 
WD40-rpts                                                                 

1 WD40-repeats found in QUERY=ENSMUSP00000069488 (Len=699):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   545-601      2.95  236.41  0.03983       25.0%     24.15

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  545-601    SGLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDP

   WD40 Template    TGECLRTLSGHTS-----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD