Input parameters:

  Query = ENSMUSP00000069334 (Len=629)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000069334, Len=629):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSAKSARYDRFSGGPANLPSSDSSGTRMETTFGPTFSTVTTITKAADGTGTYKQHRRTPSSSSTLAYSPRDEEDGMEPL 80  
WD40-rpts                                                                                      

Query       81 VFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCHAAGTGK 160 
WD40-rpts                                                                                      

Query      161 PGVFEVDPRGCPFTIKLSARKDHESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSKCTFIGNQDTYETHLET 240 
WD40-rpts                       (_________________WD 1________________)    (___________________

Query      241 CRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASML 320 
WD40-rpts      __________________WD 2_____________________________________)                    

Query      321 NDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGI 400 
WD40-rpts                              (_________________WD 3________________)    (____________

Query      401 VLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNH 480 
WD40-rpts      ____WD 4_______________)   (_______________WD 5_______________)     (___________

Query      481 WVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGT 560 
WD40-rpts      ____WD 6_______________)   (________________WD 7_______________)   (____________

Query      561 VYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC 629 
WD40-rpts      ______WD 8_________________)   (________________WD 9_______________) 

9 WD40-repeats found in QUERY=ENSMUSP00000069334 (Len=629):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   178-216      3.23  247.97  0.02798       10.0%     14.13
  WD 2:  Seg 10   221-300      3.91  276.09  0.01179       15.0%     24.24
  WD 3:  Seg 14   345-383      8.29  457.11  4.3e-05       42.5%     48.52
  WD 4:  Seg 18   388-424      7.95  443.15  6.6e-05       42.5%     47.54
  WD 5:  Seg 22   428-463      5.71  350.47  0.00118       32.5%     48.04
  WD 6:  Seg 26   469-504      4.88  316.31  0.00340       30.0%     48.07
  WD 7:  Seg 30   508-544      6.83  396.83  0.00028       25.0%     52.40
  WD 8:  Seg 34   548-588      8.49  465.35  3.3e-05       35.0%     56.53
  WD 9:  Seg 38   592-628      7.87  439.56  7.4e-05       40.0%     50.15

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  178-216    SARKDHESSCDYRPVRCPN--NP--SCPPLLKMNLEA---------------------------------------HLKECE
   WD 2  221-300    PHSKCTFIGNQDTYETHLE--TCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLD
   WD 3  345-383    FKCKGTFVGHQGPVWCLCV--YS--MGDLLFSGSSDK---------------------------------------TIKVWD
   WD 4  388-424    YKCQKTLEGHDGIV--LAL--CI--QGCKLYSGSADC---------------------------------------TIIVWD
   WD 5  428-463    LQKVNTIRAHDNPVCTLVS--SH--N--MLFSGS-LK---------------------------------------AIKVWD
   WD 6  469-504    LKLKKELTGLNHWVRALVA--AQ--S--YLYSGS-YQ---------------------------------------TIKIWD
   WD 7  508-544    LDCIHVLQTSGGSVYSIAV--T----NHHIVCGTYEN---------------------------------------LIHVWD
   WD 8  548-588    KEQVRTLTGHVGTVYALAVISTP--DQTKVFSASYDR---------------------------------------SLRVWS
   WD 9  592-628    MICTQTLLRHQGSVTALAV--SR--G--RLFSGAVDS---------------------------------------TVKVWT

   WD40 Template    GECLRTLSGHTSGVTSVSF--SP--DGKRLVSGSEDG---------------------------------------TIKVWD