Input parameters:

  Query = ENSMUSP00000068516 (Len=1503)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000068516, Len=1503):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMAGEGSTITSRIKNLLRSPSIKLRRSKAGNRREDLSSKVTLEKVLGVTVSGGRGLACDPRSGLVAYPAGCVVVLFNPRK 80  
WD40-rpts       (________________WD 1_______________)________________WD 2__________________)   

Query       81 HKQHHILNSSRKTITALAFSPDGKYLVTGESGHMPAVRVWDVAERSQVAELQEHKYGVACVAFSPSAKYIVSVGYQHDMI 160 
WD40-rpts      (__________________WD 3_________________)   (__________________WD 4_____________

Query      161 VNVWAWKKNIVVASNKVSSRVTAVSFSEDCSYFVTAGNRHIKFWYLDDSKTSKVNATVPLLGRSGLLGELRNNLFTDVAC 240 
WD40-rpts      ____)(_________________WD 5_________________)          (_______________WD 6_____

Query      241 GRGEKADSTFCITSSGLLCEFSDRRLLDKWVELRTTVAHCISVTQEYIFCGCADGTVRLFNPSNLHFLSTLPRPHALGTD 320 
WD40-rpts      __________)          (_________________WD 7_________________)                   

Query      321 IASITEASRLFSGGVNARYPDTIALTFDPTNQWLSCVYNDHSIYVWDVRDPKKVGKVYSALYHSSCVWSVEVYPEIKDSH 400 
WD40-rpts         (___________________WD 8___________________)(_________________________WD 9___

Query      401 QACLPPSSFITCSSDNTIRLWNTESSGVHGSTLHRNILSNDLIKIIYVDGNTQALLDTELPGGDKADGSLMDPRVGIRSV 480 
WD40-rpts      _____________________)(_______________WD10_______________)     (________________

Query      481 CISPNGQHLASGDRMGTLRIHELQSLSEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSLQQTLDE 560 
WD40-rpts      _WD11________________)   (__________________WD12__________________)     (_______

Query      561 HSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGEGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGCQDRNIRIFNI 640 
WD40-rpts      __________WD13_________________)    (___________________WD14__________________)(

Query      641 SSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMFGHSEIVTGMKFSNDCKHLISVSGDS 720 
WD40-rpts      ____________________WD15___________________)   (_________________WD16___________

Query      721 CIFVWRLSSEMTISMRQRLAELRQRQRGIKQQGPTSPQRASGAKQHHAPVVPPSGPALSSDSDKEGEDEGTEEEELPALP 800 
WD40-rpts      _____)                                              (_______________________WD17

Query      801 ILSKSTKKELASGSSPALLRSLSHWEMSRAQETMEYLDPAPVANTGPKRRGRWAQPGVELSVRSMLDLRQIETLAPSPRG 880 
WD40-rpts      ______________________)        (_______________WD18_______________)(____________

Query      881 PSQDSLAVSPAGPGKHGPQGPELSCVSQNERAPRLQTSQPCSCPHIIQLLSQEEGVFAQDLEPAPIEDGIVYPEPSDSPT 960 
WD40-rpts      ______WD19_________________)                                                    

Query      961 MDTSAFQVQAPTGGSLGRMYPGSRGSEKHSPDSACSVDYSSSRLSSPEHPNEDSESTEPLSVDGISSDLEEPAEGDEDEE 1040
WD40-rpts                                                                                      

Query     1041 EEGGTGLCGLQEGGPHTPDQEQFLKQHFETLANGTAPGGPARVLERTESQSISSRFLLQVQTSPLREPSLSSSGLALTSR 1120
WD40-rpts                                                                                      

Query     1121 PDQVSQVSGEQLKGSGATPPGAPPEMEPSSGNSGPKQVAPVLLTRRHNNLDNSWASKKMAATRPLAGLQKAQSVHSLVPQ 1200
WD40-rpts                                                                                      

Query     1201 DEVPSSRPLLFQEAETQGSLGSLPQAGGCSSQPHSYQNHTTSSMAKLARSISVGENPGLATEPQAPVPIRISPFNKLALP 1280
WD40-rpts                                                                                      

Query     1281 SRAHLVLDIPKPLPDRPTLTTFSPVSKGLAHNETEQSGPLVSLGKAHTTVEKHSCLGEGTTHKSRTECQAYPGPNHPCAQ 1360
WD40-rpts                                                                                      

Query     1361 QLPVNNLLQGPESLQPLSPEKTRNPVESSRPGVALSQDSELALSLQQCEQLVAELQGNVRQAVELYRAVTSYKTPSAEQS 1440
WD40-rpts                                                                                      

Query     1441 HITRLLRDTFSSVRQELEVLAGAVLSSPGGSPGAVGAEQTQALLEQYSELLLRAVERRMERRL 1503
WD40-rpts                                                                     

19 WD40-repeats found in QUERY=ENSMUSP00000068516 (Len=1503):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-38       4.06  282.39  0.00970       17.5%     33.26
  WD 2:  Seg  4    36-77       3.47  257.90  0.02064       10.0%     44.57
  WD 3:  Seg  8    81-121      7.01  404.24  0.00022       35.0%     56.10
  WD 4:  Seg 12   125-165      7.43  421.62  0.00013       35.0%     55.67
  WD 5:  Seg 16   166-205      5.54  343.48  0.00146       30.0%     54.31
  WD 6:  Seg 21   216-251      2.87  233.24  0.04385        7.5%     40.56
  WD 7:  Seg 25   262-301      6.65  389.16  0.00035       15.0%     50.96
  WD 8:  Seg 31   324-367      6.38  378.04  0.00050       25.0%     47.79
  WD 9:  Seg 35   368-422      5.66  348.47  0.00125       30.0%     54.06
  WD10:  Seg 39   423-458      3.91  276.11  0.01178       10.0%     30.46
  WD11:  Seg 42   464-502      7.77  435.55  8.4e-05       30.0%     47.09
  WD12:  Seg 45   506-547      6.57  385.91  0.00039       27.5%     56.77
  WD13:  Seg 49   553-592      6.47  382.09  0.00044       27.5%     47.95
  WD14:  Seg 52   597-639      5.57  344.67  0.00141       20.0%     57.47
  WD15:  Seg 56   640-684      6.76  394.03  0.00030       15.0%     54.19
  WD16:  Seg 60   688-726      9.51  507.37  9.0e-06       47.5%     57.67
  WD17:  Seg 67   773-823      4.08  283.26  0.00945       12.5%     28.26
  WD18:  Seg 69   832-867      4.53  301.99  0.00529       12.5%     41.31
  WD19:  Seg 72   868-908      3.61  263.70  0.01727       15.0%     14.37

Multiple sequence alignment of 19 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-38     -------------MA-----------G----EG-STI----TSRIKNLLRSPSI---K----------LRRSKA--GN--RREDLSS
   WD 2   36-77     LS-----S-----KV--------TLEK----VL-GVT----VSGGRGLACDPRS---G----------LVAYPA---G--CVVVLFN
   WD 3   81-121    -H-----K-----QH-----------H----IL-NSS----RKTITALAFSPDG---K----------YLVTGE--SGHMPAVRVWD
   WD 4  125-165    -R-----S-----QV-----------A----EL-QEH----KYGVACVAFSPSA---K----------YIVSVGYQHD--MIVNVWA
   WD 5  166-205    WK-----K----NIV-----------V----AS-NKV----SSRVTAVSFSEDC---S----------YFVTAG---N--RHIKFWY
   WD 6  216-251    -------------AT-----------V----PL-LGR----SGLLGELRNNL-F---T----------DVACGR--GE--KADSTFC
   WD 7  262-301    SD-----R-----RL-----------L----DK-WVE----LRTTVAHCISVTQ---E----------YIFCGC--AD--GTVRLFN
   WD 8  324-367    IT-----E-----AS-----------RLFSGGV-NAR----YPDTIALTFDPTN---Q----------WLSCVY--ND--HSIYVWD
   WD 9  368-422    VR-----DPKKVGKV-----------Y----SA-LYH----SSCVWSVEVYPEI---KDSHQACLPPSSFITCS--SD--NTIRLWN
   WD10  423-458    --------------T-----------E----SS-GVH----GSTLHRNILSNDL---I----------KIIYVD--GN--TQALLDT
   WD11  464-502    -D-----K-----AD-----------G----SL-MDP----RVGIRSVCISPNG---Q----------HLASGD--RM--GTLRIHE
   WD12  506-547    -L-----S-----EM-----------L----KV-EAH----DSEILCLEYSKPDTGLK----------LLASAS--RD--RLIHVLD
   WD13  553-592    -------S-----LQ-----------Q----TL-DEH----SSSITAVKFAASD---G--------QVRMISCG--AD--KSIYFRT
   WD14  597-639    -G-----E-----GV-----------Q----FT-RTHHVVRKTTLYDMDVEPSW---K----------YTAIGC--QD--RNIRIFN
   WD15  640-684    ISSGKQKK-----LF-----------K----GS-QGE----DGTLIKVQTDPSG---I----------YIATSC--SD--KNLSIFD
   WD16  688-726    -G-----E-----CV-----------A----TM-FGH----SEIVTGMKFSNDC---K----------HLISVS--GD--SCIFVWR
   WD17  773-823    PS-----G-----PALSSDSDKEGEDE----GT-EEE----ELPALPILSKSTK---K----------ELASGS--SP--ALLRSLS
   WD18  832-867    --------------E-----------T----ME-YLD----PAPVANTGPKRRG---R----------WAQPGV--EL--SVRSMLD
   WD19  868-908    LR-----Q-----IE-----------T----LAPSPR----GPSQDSLAVSPAG---P----------GKHGPQ--GP--ELSCVSQ

   WD40 Template    TG-----E-----CL-----------R----TL-SGH----TSGVTSVSFSPDG---K----------RLVSGS--ED--GTIKVWD