Input parameters:

  Query = ENSMUSP00000068267 (Len=350)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000068267, Len=350):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAAD 80  
WD40-rpts        (___________________WD 1__________________)   (_________________WD 2__________

Query       81 FTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSDDKQILS 160 
WD40-rpts      ______)   (________________WD 3________________)(__________________WD 4_________

Query      161 ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPEKEFLVA 240 
WD40-rpts      _________)   (________________WD 5_______________)   (________________WD 6______

Query      241 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKI 320 
WD40-rpts      __________)   (_________________WD 7________________)                           

Query      321 GFPETAEEELEEIASENSDSIYSSTPEVKA 350 
WD40-rpts                                    

7 WD40-repeats found in QUERY=ENSMUSP00000068267 (Len=350):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-45       8.48  465.09  3.4e-05       35.0%     50.62
  WD 2:  Seg  5    49-87       9.73  516.51  6.8e-06       30.0%     53.69
  WD 3:  Seg  9    91-128      8.45  463.69  3.5e-05       32.5%     56.49
  WD 4:  Seg 13   129-170      8.17  452.16  5.0e-05       32.5%     49.01
  WD 5:  Seg 17   174-210      5.29  333.09  0.00202       22.5%     54.79
  WD 6:  Seg 21   214-251      7.82  437.74  7.8e-05       25.0%     53.21
  WD 7:  Seg 25   255-293     10.66  554.85  2.1e-06       47.5%     53.50

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-45     MRQ---TPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQ
   WD 2   49-87     -GD---WIGTFLGHKGAVWGATLN---KDATKAATAAADFTAKVWD
   WD 3   91-128    -GD---ELMTL-AHKHIVKTVDFT---QDSNYLLTGGQDKLLRIYD
   WD 4  129-170    LNKPEAEPKEISGHTSGIKKALWC---SDDKQILSAD-DKTVRLWD
   WD 5  174-210    -MT---EVKSLNFNMS-VSSMEYI---PEGEILVI-TYGRSIAFHS
   WD 6  214-251    -LE---PIKSFEAPAT-INSASLH---PEKEFLVAGGEDFKLYKYD
   WD 7  255-293    -GE---ELESYKGHFGPIHCVRFS---PDGELYASGSEDGTLRLWQ

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFS---PDGKRLVSGSEDGTIKVWD