Input parameters:

  Query = ENSMUSP00000068103 (Len=552)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000068103, Len=552):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPERKSRTRRDRRAGATPGRKARPGSGSTPAKAARSSQRTQPAEPRAAPSAGSAAAAAEEEESRLRQRNRLTLEDDKPA 80  
WD40-rpts                                                                                      

Query       81 AERCLEQLVFGDVEDDEDALLQRLRSSRGQLHGSSDESEVENEAKDIFSQKKKQPVWVDEDDEDEEIVDMSNNRFRKDIM 160 
WD40-rpts                                                                                      

Query      161 KNASESKLSKDKLQKRLKEEFQHAMGGVPDWAEAGSKRRTSSDDESEEDEDDLLQRTGNFISTSTSLPRGILKMKNCRPA 240 
WD40-rpts                                                                                  (___

Query      241 NAERPTTARISSVQFHPGAQVVMVSGVDNAISLFQVDGKTNPKIQSIYLEKFPIFKACFSANGEEVLATSMHSKVLYVYD 320 
WD40-rpts      ______________WD 1________________) (___________________WD 2___________________)

Query      321 MLAGKLIPVHQVRGLKEKTVKQFEVSPDGSFLLISGIAGFSHLLSMKTKELIGSMKINGRIAASTFSSDSKRIYTYSENG 400 
WD40-rpts            (_________________WD 3________________)   (________________WD 4___________

Query      401 EVYVWDVNSRKCMNRFLDEGSLCGLSIAASKNGQYVACGSKSGVVNIYNQDSCLQQTNPKPIKAIMNLVTGVTSLAFNPT 480 
WD40-rpts      _____)(___________________WD 5__________________)         (__________________WD 

Query      481 TEILAVASRKMKEAVRLVHLPSCTVFSNFPVFKKSTLSRVQTMDFSPRGGYFALGNEKGRALMYRLHHYSDF 552 
WD40-rpts      6_________________)(____________________WD 7____________________)       

7 WD40-repeats found in QUERY=ENSMUSP00000068103 (Len=552):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   237-275      8.22  454.08  4.7e-05       17.5%     47.16
  WD 2:  Seg  7   277-320      7.01  404.40  0.00022       17.5%     53.47
  WD 3:  Seg 11   327-365      6.78  394.90  0.00030       17.5%     49.52
  WD 4:  Seg 15   369-406      8.01  445.57  6.1e-05       30.0%     54.76
  WD 5:  Seg 19   407-449      7.55  426.50  0.00011       20.0%     54.59
  WD 6:  Seg 22   459-499      6.37  377.90  0.00050       20.0%     48.92
  WD 7:  Seg 26   500-545      7.00  403.64  0.00023       25.0%     47.25

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  237-275    -CR---PA------NAERPTTARISSVQFHPGAQV-VMVSGV--DNAISLFQ
   WD 2  277-320    DGKTNPKI------QSIYLEKFPIFKACFSANGEEVLATSMH--SKVLYVYD
   WD 3  327-365    -IP---VH------QVRGLKEKTVKQFEVSPDGSF-LLISGI--AGFSHLLS
   WD 4  369-406    -KE---LI------GSMKIN-GRIAASTFSSDSKR-IYTYSE--NGEVYVWD
   WD 5  407-449    VNSRKCMN------RFLDEGSLCGLSIAASKNGQY-VACGSK--SGVVNIYN
   WD 6  459-499    -PK---PI------KAIMNLVTGVTSLAFNPTTEI-LAVASRKMKEAVRLVH
   WD 7  500-545    LPS---CTVFSNFPVFKKSTLSRVQTMDFSPRGGY-FALGNE--KGRALMYR

   WD40 Template    TGE---CL------RTLSGHTSGVTSVSFSPDGKR-LVSGSE--DGTIKVWD