Input parameters:

  Query = ENSMUSP00000067583 (Len=415)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000067583, Len=415):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKSLLLRYYPPGIMLEYEKGGELKTKSIDLLELSPSTDVNTLVGEIQQAEPLITASRTKQVRLLVQRLQEKLRQHSDH 80  
WD40-rpts                           (____________________WD 1____________________)             

Query       81 NFYLFKVLRAHILPLTNVALNKAGSCFITGSYDRTCKVWDTASGEELHTLEGHKNVVYAIAFNNPYGDKIATGSFDKTCK 160 
WD40-rpts       (_________________WD 2________________)   (_________________WD 3_______________

Query      161 LWSAETGKCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWDIQNGEEVVTLTGHLAEIISLSFDTSGDRIITGSFD 240 
WD40-rpts      __)   (_________________WD 4________________)   (_________________WD 5__________

Query      241 HTVVVWDASTGRKVHTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDATSGKYVATLTGHDDEILDSCFDYTGKLIAT 320 
WD40-rpts      ______)   (_________________WD 6________________)   (_________________WD 7______

Query      321 ASADGTARVYNATTRKCVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGN 400 
WD40-rpts      __________)   (_________________WD 8________________)   (_________________WD 9__

Query      401 IVITGSKDNSCRIWR 415 
WD40-rpts      ______________)

9 WD40-repeats found in QUERY=ENSMUSP00000067583 (Len=415):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-67       7.23  413.52  0.00017       25.0%     49.35
  WD 2:  Seg  8    82-120      9.24  496.39  1.3e-05       32.5%     51.29
  WD 3:  Seg 12   124-163      9.28  498.01  1.2e-05       42.5%     55.23
  WD 4:  Seg 16   167-205     10.41  544.77  2.8e-06       40.0%     56.93
  WD 5:  Seg 20   209-247     10.52  549.38  2.4e-06       45.0%     55.53
  WD 6:  Seg 24   251-289      9.81  519.90  6.1e-06       35.0%     55.75
  WD 7:  Seg 28   293-331      9.71  515.67  7.0e-06       32.5%     55.62
  WD 8:  Seg 32   335-373     10.60  552.60  2.2e-06       40.0%     57.94
  WD 9:  Seg 36   377-415      9.95  525.55  5.1e-06       35.0%     49.98

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-67     GGELKTKSIDLLELSPSTDVNTLVGEI-QQAEPLITASRTKQVRLLV
   WD 2   82-120    -FYL------FKVLRAHILPLTNVALN-KAGSCFITGSYDRTCKVWD
   WD 3  124-163    -GEE------LHTLEGHKNVVYAIAFNNPYGDKIATGSFDKTCKLWS
   WD 4  167-205    -GKC------YHTFRGHTAEIVCLSFN-PQSTVVATGSMDTTAKLWD
   WD 5  209-247    -GEE------VVTLTGHLAEIISLSFD-TSGDRIITGSFDHTVVVWD
   WD 6  251-289    -GRK------VHTLIGHCAEISSALFN-WDCSLILTGSMDKTCMLWD
   WD 7  293-331    -GKY------VATLTGHDDEILDSCFD-YTGKLIATASADGTARVYN
   WD 8  335-373    -RKC------VTKLEGHEGEISKISFN-PQGNRLLTGSSDKTARIWD
   WD 9  377-415    -GQC------LQVLEGHTDEIFSCAFN-YKGNIVITGSKDNSCRIWR

   WD40 Template    TGEC------LRTLSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD