Input parameters:

  Query = ENSMUSP00000067400 (Len=1358)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000067400, Len=1358):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNQLAGIAPSQILSVESYFSDIHDFEYDKSLGSTRFFKVARAKHREGLVVVKVFAIQDPTLPLTSYKQELEELKIRLHS 80  
WD40-rpts                                                                                      

Query       81 AQNCLPFQKAAEKASEKAAMLFRQYVRDNLYDRISTRPFLNNIEKRWIAFQILTAVDQAHKSGVRHGDIKTENVMVTSWN 160 
WD40-rpts                                                                                      

Query      161 WVLLTDFASFKPTYLPEDNPADFNYFFDTSRRRTCYIAPERFVDGGMFATELEYMRDPSTPLVDLNSNQRARGELKRAMD 240 
WD40-rpts                                                                                      

Query      241 IFSAGCVIAELFTEGVPLFDLSQLLAYRNGHFFPEQVLNKIEDRSIRDLVTQMINREPEKRLEAEDYLKQQRGNAFPEIF 320 
WD40-rpts                                                                                      

Query      321 YTFLQPYMAQFAKETFLSADERILVIRKDLGNIIHNLCGHDLPEKAEGESRASGLVVLVSVITSCLQTLKSCDSKLAALE 400 
WD40-rpts                                                                                      

Query      401 LILHLAPRLSVEILLDRITPYLLHFSNDSVPRVRAEALRTLTKVLALVQEVPRNDVNIYPEYILPGIAHLAQDDATIVRL 480 
WD40-rpts                                                                                      

Query      481 AYAENIALLAETALRFLELVQLKTLNMENEPDNEEVDEATRPNGDYDTELQALHEMVQQKVVTLLSDPENIVKQTLMESG 560 
WD40-rpts                                                                                      

Query      561 ITRLCVFFGRQKANDVLLSHMITFLNDKNDWHLRGAFFDSIVGVAAYVGWQSSSILKPLLQQGLSDAEEFVIVKALNALT 640 
WD40-rpts                                                                                      

Query      641 CMCQLGLLQKPHVYEFASDIAPFLCHPNLWIRYGAVGFITVVAHQISTADVYCKLMPYLDPYITQPVIQIERKLVLLSVL 720 
WD40-rpts                                                                                      

Query      721 KEPVSRSIFDYALRSKDIASLFRHLHMRQKKRNGSLLDCPPPEDPTIAQLLKKLLSQGMTEEEEDKLLALKDFMMKSNRA 800 
WD40-rpts                                                                                      

Query      801 KANAVDQSHLHDSSQKGVIDLAALGITGRQVDLVKTKQEPDEKRARKHVKQDSNVNEEWKSMFGSLEPPNIPQALPKTSD 880 
WD40-rpts                                                                                      

Query      881 HEVVQPGKPPRSESSAGICVPLSTSPQVSEAAHIPSKKPVIPVVSSTVLPSTYQIRITTCKTELQQLIQQKREQCNAERI 960 
WD40-rpts                                                                                      

Query      961 AKQMMENAEWESKPPPPGWRPKGLLVAHLHEHKSAVNRIRVSDEHLLFATCSNDGTVKIWNSQKMEGKTTTTRSILTYSR 1040
WD40-rpts                            (_________________WD 1________________)          (________

Query     1041 IGGRVKTLTFCQGSHYLAIASDNGAVQLLGIEASKLPKSPKIHPLQSRILDQKEDGCVVDMHHFNSGAQSVLAYATVNGS 1120
WD40-rpts      _________WD 2________________)   (_______________________WD 3___________________

Query     1121 LVGWDLRSSSNAWTLKHDLKSGLITSFAVDIHQCWLCIGTSSGAMACWDMRFQLPISSHCHPSRARIRRLSMHPLYQSWV 1200
WD40-rpts      ____)   (__________________WD 4_________________)      (_________________WD 5___

Query     1201 IAAVQGNNEVSMWDMETGDRRLTLWASSAPPLSELQPSPHSVHGIYCSPADGNPILLTAGSDMKIRFWDLVSPERSYVVA 1280
WD40-rpts      _____________)              (__________________WD 6_________________)           

Query     1281 GSTGSPSVSYYKKIIEGTEVVQEIQNKQKVGPSDDTPRRGPESLPVGHHDIITDIATFQTTQGFIVTASRDGIVKVWK 1358
WD40-rpts                                  (______________________WD 7______________________)

7 WD40-repeats found in QUERY=ENSMUSP00000067400 (Len=1358):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   983-1021     6.94  401.27  0.00024       30.0%     50.36
  WD 2:  Seg 17  1032-1070     7.10  408.03  0.00020       17.5%     54.59
  WD 3:  Seg 21  1074-1125     5.39  337.25  0.00177       17.5%     43.26
  WD 4:  Seg 25  1129-1169     6.09  366.09  0.00072       22.5%     54.77
  WD 5:  Seg 29  1176-1214     5.00  321.01  0.00293       10.0%     46.10
  WD 6:  Seg 33  1229-1269     6.14  368.20  0.00068       25.0%     43.74
  WD 7:  Seg 39  1309-1358     5.91  358.78  0.00091       27.5%     34.73

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  983-1021   -GLL---------VAHLHE--HKSAVNRI-RVSD--EH-------------LL--FATCSNDGTVKIWN
   WD 2 1032-1070   -TRS---------ILTYSR--IGGRVKTL-TFCQ--GS-------------HY--LAIASDNGAVQLLG
   WD 3 1074-1125   -SKL---------PKSPKI--HPLQSRIL-DQKE--DGCVVDMHHFNSGAQSV--LAYATVNGSLVGWD
   WD 4 1129-1169   -SSN---------AWTLKHDLKSGLITSF-AVDI--HQ-------------CW--LCIGTSSGAMACWD
   WD 5 1176-1214   ---I---------SSHCHP--SRARIRRL-SMHP--LY-------------QSWVIAAVQGNNEVSMWD
   WD 6 1229-1269   -APP---------LSELQP--SPHSVHGI-YCSPADGN-------------PI--LLTAGSDMKIRFWD
   WD 7 1309-1358   KVGPSDDTPRRGPESLPVG--HHDIITDIATFQT--TQ-------------GF--IVTASRDGIVKVWK

   WD40 Template    TGEC---------LRTLSG--HTSGVTSV-SFSP--DG-------------KR--LVSGSEDGTIKVWD