Input parameters:

  Query = ENSMUSP00000067277 (Len=514)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000067277, Len=514):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIES 80  
WD40-rpts                                                                                      

Query       81 LSLIDAVMPDVVQTRQQAYRDKLAQQHAAAAAAAAAATNQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPSN 160 
WD40-rpts                                                                             (________

Query      161 KAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGPTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLL 240 
WD40-rpts      ____________WD 1____________________)                  (________________WD 2____

Query      241 ATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNN 320 
WD40-rpts      ____________)  (_________________WD 3________________)   (________________WD 4__

Query      321 TFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWS 400 
WD40-rpts      ______________)   (_________________WD 5________________)   (___________________

Query      401 PTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY 480 
WD40-rpts      __WD 6_____________________)   (_________________WD 7________________)   (______

Query      481 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK 514 
WD40-rpts      __________WD 8________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000067277 (Len=514):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   152-197      9.19  494.43  1.3e-05       35.0%     49.75
  WD 2:  Seg 12   216-253      8.64  471.49  2.7e-05       25.0%     38.03
  WD 3:  Seg 15   256-294      9.49  506.49  9.3e-06       25.0%     52.47
  WD 4:  Seg 19   298-335      7.24  413.56  0.00017       22.5%     50.54
  WD 5:  Seg 23   339-377     10.18  535.32  3.8e-06       35.0%     55.64
  WD 6:  Seg 27   381-428      8.35  459.49  4.0e-05       32.5%     55.43
  WD 7:  Seg 31   432-470     10.73  558.05  1.9e-06       47.5%     55.53
  WD 8:  Seg 35   474-511      7.69  432.23  9.3e-05       22.5%     56.72

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  152-197    DGDVEIPSNKAVVLRGHESEVFICAWNPVSD---------LLASGSGDSTARIWN
   WD 2  216-253    --RE------GGQDVPSNKDVTSLDWNSEGT---------LLATGSYDGFARIWT
   WD 3  256-294    -GNL------ASTLGQHKGPIFALKWNKKGN---------FILSAGVDKTTIIWD
   WD 4  298-335    -GEA------KQQFPFHSAPALDVDWQSNNT----------FASCSTDMCIHVCK
   WD 5  339-377    -DRP------IKTFQGHTNEVNAIKWDPTGN---------LLASCSDDMTLKIWS
   WD 6  381-428    -DNC------VHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWD
   WD 7  432-470    -GIC------IHTLTKHQEPVYSVAFSPDGR---------YLASGSFDKCVHIWN
   WD 8  474-511    -GAL------VHSYRGT-GGIFEVCWNAAGD---------KVGASASDGSVCVLD

   WD40 Template    TGEC------LRTLSGHTSGVTSVSFSPDGK---------RLVSGSEDGTIKVWD