Input parameters:

  Query = ENSMUSP00000067102 (Len=310)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000067102, Len=310):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKSLLLRYYPPGIMLEYEKGGELKTKSIDLLELSPSTDVNTLVGEIQQAEPLITASRTKQVRLLVQRLQEKLRQHSDH 80  
WD40-rpts                           (____________________WD 1____________________)             

Query       81 NFYLFKVLRAHILPLTNVALNKAGSCFITGSYDRTCKVWDTASGEELHTLEGHKNVVYAIAFNNPYGKVHTLIGHCAEIS 160 
WD40-rpts       (_________________WD 2________________)                         (______________

Query      161 SALFNWDCSLILTGSMDKTCMLWDATSGKYVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCVTKLEGHE 240 
WD40-rpts      ___WD 3________________)   (_________________WD 4________________)   (__________

Query      241 GEISKISFNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNSCRIWR 310 
WD40-rpts      _______WD 5________________)   (_________________WD 6________________)

6 WD40-repeats found in QUERY=ENSMUSP00000067102 (Len=310):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-67       7.58  427.60  0.00011       25.0%     51.02
  WD 2:  Seg  8    82-120      9.45  505.07  9.7e-06       32.5%     51.77
  WD 3:  Seg 14   146-184      9.81  519.91  6.1e-06       32.5%     53.60
  WD 4:  Seg 18   188-226      9.91  524.13  5.4e-06       32.5%     53.56
  WD 5:  Seg 22   230-268     10.81  561.29  1.7e-06       40.0%     56.21
  WD 6:  Seg 26   272-310     10.18  535.03  3.8e-06       35.0%     49.26

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-67     GGELKTKSIDLLELSPSTDVNTLVGEIQQAEPLITASRTKQVRLLV
   WD 2   82-120    -FYL------FKVLRAHILPLTNVALNKAGSCFITGSYDRTCKVWD
   WD 3  146-184    -YGK------VHTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWD
   WD 4  188-226    -GKY------VATLTGHDDEILDSCFDYTGKLIATASADGTARVYN
   WD 5  230-268    -RKC------VTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWD
   WD 6  272-310    -GQC------LQVLEGHTDEIFSCAFNYKGNIVITGSKDNSCRIWR

   WD40 Template    TGEC------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD